ICEberg
ICEberg ID354
NameICESa1
FamilyICE6013
OrganismStaphylococcus aureus subsp. aureus ST398
Size (bp)13373
GC content [Genome] (%)30 [33]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM990992 (complete ICE sequence in this genome)
Replicon chromosome (2872582 bp, Project:29427) [AM990992]
Genome coordinates74898..88270
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESa1 form AM990992
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1SAPIG006370210..70470 [+], 261283469290 conserved protein YrkD
2SAPIG006470494..71225 [+], 732283469291 domain of unknown function, putative
3SAPIG006571434..71604 [+], 171283469292 copper P-type ATPase AtkB
4SAPIG006671622..72167 [+], 546283469293 lipoprotein, putative
5SAPIG006772448..74238 [+], 1791283469294 hypothetical protein
6SAPIG006874279..74932 [+], 654283469295 hypothetical protein
7SAPIG006975118..75471 [-], 354283469296  [UniProt] transposase InsI for insertion sequence element IS30B/C/D
8SAPIG007075635..76138 [-], 504283469297  [UniProt] N-region of transposase of
9SAPIG007176247..76603 [-], 357283469298  [UniProt] lipoprotein, putative
10SAPIG007276659..77249 [-], 591283469299  [UniProt] conserved hypothetical protein
11SAPIG007377256..78302 [-], 1047283469300  [UniProt] transfer complex protein TraG
12SAPIG007478292..80160 [-], 1869283469301  [UniProt] membrane protein, putative
13SAPIG007580165..81403 [-], 1239283469302  [UniProt] ftsk/spoiiie family protein
14SAPIG007681406..81522 [-], 117283469303  [UniProt] ftsk/spoiiie family protein
15SAPIG007781576..84071 [-], 2496283469304  [UniProt] conserved hypothetical protein
16SAPIG007884106..84489 [-], 384283469305  [UniProt] conserved hypothetical protein
17SAPIG007984501..84761 [-], 261283469306  [UniProt] conserved hypothetical protein
18SAPIG008084766..85821 [-], 1056283469307  [UniProt] conserved hypothetical protein
19SAPIG008185882..86661 [-], 780283469308  [UniProt] replication initiation factor family protein
20SAPIG008286658..86828 [-], 171283469309  [UniProt] replication initiation factor family protein
21SAPIG008387147..87449 [-], 303283469310  [UniProt] conserved hypothetical protein
22SAPIG008487463..87783 [-], 321283469311  [UniProt] conserved hypothetical protein
23SAPIG008587934..88218 [-], 285283469312  [UniProt] conserved hypothetical protein
24SAPIG008688318..88812 [+], 495283469313 conserved hypothetical protein
25SAPIG008789066..91270 [+], 2205283469314 trans-Golgi membrane protein p230
26SAPIG008891501..91725 [+], 225283469315 transposase for insertion sequence element E
27SAPIG008991737..92735 [+], 999283469316 transposase
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Schijffelen MJ; Boel CH; van Strijp JA; Fluit AC (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 11:376. [PudMed:20546576]