ICEberg
ICEberg ID358
NameTn6012
FamilyICE6013
OrganismStaphylococcus aureus JCSC6826
Size (bp)13339
GC content [Genome] (%)30.1
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAB435014 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates928..14266
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of Tn6012 form AB435014
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1mecR154..927 [+], 874pseudogene -
2tnp1148..2168 [-], 1021pseudogene -
3-2277..2618 [-], 342238773867  [UniProt] hypothetical protein
4-2674..3264 [-], 591238773868  [UniProt] hypothetical protein
5-3271..4317 [-], 1047238773869  [UniProt] putative traG membrane protein
6-4307..6154 [-], 1848238773870  [UniProt] hypothetical membrane protein
7-6159..7517 [-], 1359238773871  [UniProt] FtsK/SpoIIIE family protein
8-7571..10066 [-], 2496238773872  [UniProt] hypothetical membrane protein
9-10101..10484 [-], 384238773873  [UniProt] hypothetical membrane protein
10-10496..10756 [-], 261238773874  [UniProt] hypothetical membrane protein
11-10761..11816 [-], 1056238773875  [UniProt] hypothetical membrane protein
12-11877..12968 [-], 1092238773876  [UniProt] replication initiation factor family protein
13-13143..13445 [-], 303238773877  [UniProt] hypothetical protein
14-13459..13779 [-], 321238773878  [UniProt] hypothetical protein
15-13930..14214 [-], 285238773879  [UniProt] hypothetical protein
16-14361..14858 [+], 498238773880 hypothetical protein
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins13Fasta
(1) Han X; Ito T; Takeuchi F; Ma XX; Takasu M; Uehara Y; Oliveira DC; de Lencastre H; Hiramatsu K (2009). Identification of a novel variant of staphylococcal cassette chromosome mec, type II.5, and Its truncated form by insertion of putative conjugative transposon Tn6012. Antimicrob Agents Chemother. 53(6):2616-9. [PudMed:19364875] in_silico
 
in_silico in silico analysis literature