ICEberg
ICEberg
ICEberg ID360
NameICESenTy2-1
FamilySPI-7
OrganismSalmonella enterica subsp. enterica serovar Typhi str. Ty2
Size (bp)131752
GC content [Genome] (%)50 [52]
Insertion sitetRNA-Phe(t4372)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAE014613 (complete ICE sequence in this genome)
Replicon chromosome (4791961 bp, Project:371) [NC_004631]
Genome coordinates4394224..4525975
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICESenTy2-1 form AE014613
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1t42194389499..4389696 [-], 19829140117 hypothetical protein
2t42204389719..4390006 [-], 28829140118 putative GerE family regulatory protein
3t42214390003..4390878 [-], 87629140119 araC family regulatory protein
4t42224391144..4391362 [-], 21929140120 hypothetical protein
5t42234391683..4391976 [+], 29429140121 conserved hypothetical protein
6t42244391973..4392464 [+], 49229140122 putative acetyltransferase
7phoN4392705..4393457 [-], 75329140123 nonspecific acid phosphatase precursor
8t42264394302..4395336 [+], 103529140124  [UniProt]  [KEGG]hypothetical protein
9t42274395333..4396697 [+], 136529140125  [UniProt]  [KEGG]DNA helicase
10t42284396690..4398489 [+], 180029140126  [UniProt]  [KEGG]hypothetical protein
11t42294398658..4398963 [+], 30629140127  [UniProt]  [KEGG]hypothetical protein
12t42304399091..4399672 [+], 58229140128  [UniProt]  [KEGG]hypothetical protein
13t42314399757..4400314 [+], 55829140129  [UniProt]  [KEGG]hypothetical protein
14t42324400559..4401902 [+], 134429140130  [UniProt]  [KEGG]hypothetical protein
15t42334402488..4403267 [+], 78029140131  [UniProt]  [KEGG]hypothetical protein
16topB4403378..4405372 [+], 199529140132  [UniProt]  [KEGG]topoisomerase B
17t42354406040..4406489 [+], 45029140133  [UniProt]  [KEGG]hypothetical protein
18t42364406570..4406788 [+], 21929140134  [UniProt]  [KEGG]hypothetical protein
19ssb4406801..4407337 [+], 53729140135  [UniProt]  [KEGG]single strand binding proteinVF
20pilL4408518..4409762 [+], 124529140136  [UniProt]  [KEGG]putative exported proteinVF
21pilM4409765..4410184 [+], 42029140137  [UniProt]  [KEGG]putative exported protein
22pilO4411887..4413182 [+], 129629140138  [UniProt]  [KEGG]putative pilus assembly protein
23pilP4413280..4413750 [+], 47129140139  [UniProt]  [KEGG]pilus assembly proteinVF
24pilQ4413760..4415475 [+], 171629140140  [UniProt]  [KEGG]nucleotide-binding proteinVF
25pilR4415472..4416557 [+], 108629140141  [UniProt]  [KEGG]putative membrane proteinVF
26pilS4416557..4417192 [+], 63629140142  [UniProt]  [PDB]  [KEGG]prepilinVF
27pilT4417202..4417678 [+], 47729140143  [UniProt]  [KEGG]putative membrane protein
28pilU4417675..4418337 [+], 66329140144  [UniProt]  [KEGG]prepilin peptidase
29pilV4418334..4419641 [+], 130829140145  [UniProt]  [KEGG]prepilinVF
30rci4419989..4421140 [+], 115229140146  [UniProt]  [KEGG]shufflon-specific DNA recombinase
31pilK4421237..4421704 [+], 46829140147  [UniProt]  [KEGG]putative exported protein
32t42544421916..4422791 [+], 87629140148  [UniProt]  [KEGG]hypothetical protein
33t42554423298..4424212 [+], 91529140149  [UniProt]  [KEGG]putative membrane protein
34t42564424231..4424971 [+], 74129140150  [UniProt]  [KEGG]putative exported protein
35t42574425085..4425636 [+], 55229140151  [UniProt]  [KEGG]hypothetical protein
36t42584425672..4426172 [+], 50129140152  [UniProt]  [KEGG]hypothetical protein
37t42594426182..4426751 [+], 57029140153  [UniProt]  [KEGG]putative membrane protein
38t42604426771..4428861 [+], 209129140154  [UniProt]  [KEGG]hypothetical protein
39t42614428858..4429616 [+], 75929140155  [UniProt]  [KEGG]putative membrane protein
40t42624429835..4430107 [+], 27329140156  [UniProt]  [KEGG]hypothetical protein
41t42634430107..4430346 [+], 24029140157  [UniProt]  [KEGG]putative membrane protein
42t42644430376..4430738 [+], 36329140158  [UniProt]  [KEGG]putative membrane protein
43t42654431119..4431772 [+], 65429140159  [UniProt]  [KEGG]possible exported protein
44t42664431772..4432671 [+], 90029140160  [UniProt]  [KEGG]hypothetical protein
45t42684432661..4434139 [+], 147929140161  [UniProt]  [KEGG]putative exported protein
46t42674434132..4434575 [+], 44429140162  [UniProt]  [KEGG]putative lipoprotein
47t42694434572..4434991 [+], 42029140163  [UniProt]  [KEGG]hypothetical protein
48t42704434988..4437411 [+], 242429140164  [UniProt]  [KEGG]hypothetical protein
49t42714437566..4437952 [+], 38729140165  [UniProt]  [KEGG]hypothetical protein
50t42724438107..4438499 [+], 39329140166  [UniProt]  [KEGG]hypothetical protein
51t42734438496..4439464 [+], 96929140167  [UniProt]  [KEGG]hypothetical protein
52t42744439479..4440909 [+], 143129140168  [UniProt]  [KEGG]hypothetical protein
53t42754440906..4441238 [+], 33329140169  [UniProt]  [KEGG]putative membrane protein
54t42764441242..4442747 [+], 150629140170  [UniProt]  [KEGG]putative membrane protein
55t42774442986..4444233 [+], 124829140171  [UniProt]  [KEGG]conserved hypothetical proteinVF
56t42784444245..4444859 [+], 61529140172  [UniProt]  [KEGG]conserved hypothetical proteinVF
57t42794445070..4445612 [-], 54329140173  [UniProt]  [KEGG]hypothetical protein
58t42804446878..4447798 [+], 92129140174  [UniProt]  [KEGG]hypothetical protein
59t42814448315..4448824 [+], 51029140175  [UniProt]  [KEGG]hypothetical protein
60t42824448920..4449300 [+], 38129140176  [UniProt]  [KEGG]hypothetical protein
61t42834449766..4450350 [+], 58529140177  [UniProt]  [KEGG]hypothetical protein
62t42844450347..4450643 [+], 29729140178  [UniProt]  [KEGG]hypothetical protein
63t42854450721..4451179 [+], 45929140179  [UniProt]  [KEGG]hypothetical protein
64t42864451268..4453217 [+], 195029140180  [UniProt]  [KEGG]hypothetical proteinVF
65t42874453289..4454197 [+], 90929140181  [UniProt]  [KEGG]hypothetical protein
66t42884454271..4455170 [+], 90029140182  [UniProt]  [KEGG]hypothetical protein
67t42894455212..4455571 [+], 36029140183  [UniProt]  [KEGG]conserved hypothetical protein
68t42904455671..4455940 [-], 27029140184  [UniProt]  [KEGG]hypothetical protein
69samB4456072..4457346 [-], 127529140185  [UniProt]  [KEGG]UV protection protein
70t42934457565..4457942 [+], 37829140186  [UniProt]  [KEGG]hypothetical protein
71t42944458029..4458247 [-], 21929140187  [UniProt]  [KEGG]putative positive regulator of late gene transcription
72t42954458315..4459415 [-], 110129140188  [UniProt]  [KEGG]putative regulator of late gene expression
73t42964459412..4459897 [-], 48629140189  [UniProt]  [KEGG]putative phage tail protein
74t42974459897..4462677 [-], 278129140190  [UniProt]  [KEGG]hypothetical protein
75t42984462670..4462789 [-], 12029140191  [UniProt]  [KEGG]hypothetical protein
76t42994462804..4463106 [-], 30329140192  [UniProt]  [KEGG]putative phage tail protein
77t43004463161..4463676 [-], 51629140193  [UniProt]  [KEGG]probable major tail tube protein
78t43014463686..4464858 [-], 117329140194  [UniProt]  [KEGG]probable major tail sheath protein
79sopE4465393..4466115 [+], 72329140195  [UniProt]  [KEGG]invasion-associated secreted proteinVF
80t43044466313..4466720 [-], 40829140196  [UniProt]  [KEGG]putative phage tail fiber protein
81t43054466727..4468346 [-], 162029140197  [UniProt]  [KEGG]probable phage tail fiber protein
82t43064468343..4468948 [-], 60629140198  [UniProt]  [KEGG]putative phage tail protein
83t43074468941..4469849 [-], 90929140199  [UniProt]  [KEGG]probable phage baseplate assembly protein
84t43084469836..4470195 [-], 36029140200  [UniProt]  [KEGG]phage baseplate assembly protein
85t43094470192..4470770 [-], 57929140201  [UniProt]  [KEGG]putative phage baseplate assembly protein
86t43104470839..4471285 [-], 44729140202  [UniProt]  [KEGG]putative phage tail completion protein
87t43124471805..4472230 [-], 42629140203  [UniProt]  [KEGG]putative regulatory protein
88t43134472230..4472607 [-], 37829140204  [UniProt]  [KEGG]putative membrane protein
89nucD4472612..4473082 [-], 47129140205  [UniProt]  [KEGG]putative lysozyme
90nucE4473102..4473317 [-], 21629140206  [UniProt]  [KEGG]possible secretion protein
91t43164473321..4473524 [-], 20429140207  [UniProt]  [KEGG]putative phage tail protein
92t43174473524..4473988 [-], 46529140208  [UniProt]  [KEGG]putative capsid completion protein
93t43184474082..4474732 [-], 65129140209  [UniProt]  [KEGG]putative phage terminase
94t43194474736..4475800 [-], 106529140210  [UniProt]  [KEGG]putative major capsid protein
95t43204475817..4476650 [-], 83429140211  [UniProt]  [KEGG]putative capsid protein
96t43224476793..4478559 [+], 176729140212  [UniProt]  [KEGG]probable terminase subunit
97t43214478556..4479602 [+], 104729140213  [UniProt]  [KEGG]probable capsid portal protein
98t43234479651..4480346 [-], 69629140214  [UniProt]  [KEGG]hypothetical protein
99t43244480366..4481430 [-], 106529140215  [UniProt]  [KEGG]hypothetical protein
100t43254481427..4482491 [-], 106529140216  [UniProt]  [KEGG]hypothetical protein
101t43264482501..4482719 [-], 21929140217  [UniProt]  [KEGG]hypothetical protein
102t43284483416..4485824 [-], 240929140218  [UniProt]  [KEGG]conserved hypothetical protein
103t43294485815..4486675 [-], 86129140219  [UniProt]  [KEGG]DNA adenine methylase
104t43304486672..4487256 [-], 58529140220  [UniProt]  [KEGG]putative exonuclease
105t43314487253..4487480 [-], 22829140221  [UniProt]  [KEGG]hypothetical protein
106t43324487480..4487713 [-], 23429140222  [UniProt]  [KEGG]hypothetical protein
107t43334487781..4488122 [-], 34229140223  [UniProt]  [KEGG]conserved hypothetical protein
108t43344488086..4488286 [-], 20129140224  [UniProt]  [KEGG]hypothetical protein
109cII4488294..4488803 [-], 51029140225  [UniProt]  [KEGG]phage regulatory protein
110apl4488836..4489078 [-], 24329140226  [UniProt]  [KEGG]phage regulatory protein
111cI4489195..4489827 [+], 63329140227  [UniProt]  [KEGG]phage repressor protein cI
112t43384489831..4490856 [+], 102629140228  [UniProt]  [KEGG]phage integraseVF
113t43404491584..4491697 [+], 11429140229  [UniProt]  [KEGG]hypothetical protein
114t43414491933..4492220 [+], 28829140230  [UniProt]  [KEGG]hypothetical protein
115t43424492231..4493121 [+], 89129140231  [UniProt]  [KEGG]Putative methyltransferase
116yjhP4493121..4493867 [+], 74729140232  [UniProt]  [KEGG]conserved hypothetical protein
117vexE4494169..4496139 [-], 197129140233  [UniProt]  [KEGG]Vi polysaccharide export proteinVF
118vexD4496159..4497463 [-], 130529140234  [UniProt]  [KEGG]Vi polysaccharide export inner-membrane proteinVF
119vexC4497486..4498181 [-], 69629140235  [UniProt]  [KEGG]Vi polysaccharide export ATP-binding proteinVF
120vexB4498207..4499001 [-], 79529140236  [UniProt]  [KEGG]Vi polysaccharide export inner-membrane proteinVF
121vexA4499011..4500078 [-], 106829140237  [UniProt]  [KEGG]Vi polysaccharide export proteinVF
122tviE4500123..4501859 [-], 173729140238  [UniProt]  [KEGG]Vi polysaccharide biosynthesis protein TviEVF
123tviD4501859..4504354 [-], 249629140239  [UniProt]  [KEGG]Vi polysaccharide biosynthesis proteinVF
124tviC4504378..4505424 [-], 104729140240  [UniProt]  [KEGG]Vi polysaccharide biosynthesis protein, epimeraseVF
125tviB4505427..4506704 [-], 127829140241  [UniProt]  [KEGG]Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenaseVF
126tviA4506949..4507488 [-], 54029140242  [UniProt]  [KEGG]Vi polysaccharide biosynthesis proteinVF
127t43544508029..4508217 [+], 18929140244  [UniProt]  [KEGG]hypothetical protein
128t43554508342..4509853 [+], 151229140245  [UniProt]  [KEGG]putative DNA helicase
129t43564509837..4511426 [+], 159029140246  [UniProt]  [PDB]  [KEGG]hypothetical protein
130t43574511590..4512603 [+], 101429140247  [UniProt]  [KEGG]probable phage integrase
131t43584513030..4513323 [+], 29429140248  [UniProt]  [KEGG]hypothetical proteinTA
132t43594513320..4513808 [+], 48929140249  [UniProt]  [KEGG]conserved hypothetical proteinTA
133t43604513988..4514440 [-], 45329140250  [UniProt]  [KEGG]putative membrane protein
134t43614515077..4517362 [-], 228629140251  [UniProt]  [KEGG]hypothetical protein
135t43624517443..4519116 [-], 167429140252  [UniProt]  [KEGG]putative membrane protein
136t43634519663..4520124 [+], 46229140253  [UniProt]  [KEGG]hypothetical protein
137cII4520121..4520342 [+], 22229140254  [UniProt]  [KEGG]transcriptional regulatory protein
138t43654520376..4520519 [-], 14429140255  [UniProt]  [KEGG]hypothetical protein
139t43664520735..4521061 [-], 32729140256  [UniProt]  [KEGG]hypothetical protein
140t43674521199..4521981 [+], 78329140257  [UniProt]  [KEGG]hypothetical protein
141t43684522006..4522218 [-], 21329140258  [UniProt]  [KEGG]putative membrane protein
142-4522962..4524245 [-], 128429140259  [UniProt] putative membrane protein
143int4524556..4525815 [-], 126029140260  [UniProt]  [KEGG]bacteriophage integraseVF
144yjdC4526166..4526741 [-], 57629140261 putative transcriptional regulator
145dsbD4526778..4528481 [-], 170429140262 thiol:disulfide interchange protein DsbD
146cutA4528457..4528804 [-], 34829140263 periplasmic divalent cation tolerance protein CutA
147dcuA4528925..4530226 [-], 130229140264 anaerobic C4-dicarboxylate transporter
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins136Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(2) Identified as part of this study from AE014613
 
in_silico in silico analysis literature