ICEberg
ICEberg ID362
NameTn1311
FamilyTn5253
OrganismStreptococcus pneumoniae SpnF21
Size (bp)> 75 K
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN667862 (partical ICE sequence)
experimental This is a ICE derived from experimental literature.
Incomplete gene list of Tn1311 from FN667862
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-131..1639 [-], 1509295980924  [UniProt] putative integrase
2-1724..1993 [-], 270295980925  [UniProt] putative excisionase
3-2227..2451 [-], 225295980926  [UniProt] hypothetical protein
4-2555..4147 [-], 1593295980927  [UniProt] putative relaxase
5-4371..4736 [-], 366295980928  [UniProt] hypotheical protein
6-4741..5037 [-], 297295980929  [UniProt] hypothetical protein
7-5549..6631 [+], 1083295980930  [UniProt] hypothetical protein
8-6717..8534 [-], 1818295980931  [UniProt] putative ATP-dependent DNA helicase
9-8521..10590 [-], 2070295980932  [UniProt] putative DNA helicase associated protein
10-11241..11813 [+], 573295980933  [UniProt] hypothetical protein
11-11810..13060 [-], 1251295980934  [UniProt] hypothetical protein
12-13154..14050 [+], 897295980935  [UniProt] hypothetical protein
13-14427..14798 [-], 372295980936  [UniProt] hypothetical protein
14-15313..15540 [-], 228295980937  [UniProt] hypothetical protein
15-15531..16166 [-], 636295980938  [UniProt] hypothetical protein
16-16245..16520 [-], 276295980939  [UniProt] hypothetical protein
17-16558..16941 [-], 384295980940  [UniProt] hypothetical protein
18-16938..17171 [-], 234295980941  [UniProt] hypothetical protein
19-17222..18307 [-], 1086295980942  [UniProt] hypothetical protein
20-18317..18958 [-], 642295980943  [UniProt] hypothetical protein
21rep19910..20845 [+], 936295980944  [UniProt] replication protein
22cat21710..22360 [-], 651295980945  [UniProt] chloramphenicol acetyltransferaseAR
23-22532..22780 [-], 249295980946  [UniProt] hypothetical protein
24-23028..23834 [-], 807295980947  [UniProt] hypothetical protein
25-24295..25065 [-], 771295980948  [UniProt] hypothetical proteinTA
26-25065..25541 [-], 477295980949  [UniProt] putative transcriptional regulatorTA
27-25612..25884 [-], 273295980950  [UniProt] hypothetical protein
28-25922..26305 [-], 384295980951  [UniProt] hypothetical protein
29-26302..26535 [-], 234295980952  [UniProt] hypothetical protein
30-27132..27668 [-], 537295980953  [UniProt] hypothetical protein
31-27678..28154 [-], 477295980954  [UniProt] hypothetical protein
32-29073..29261 [+], 189295980955  [UniProt] hypothetical protein
33-29540..30436 [+], 897295980956  [UniProt] hypothetical protein
34-30399..31079 [-], 681295980957  [UniProt] hypothetical protein
35int-Tn31256..32473 [-], 1218295980958  [UniProt] integrase
36xis-Tn32555..32758 [-], 204295980959  [UniProt] excisionase
37-32742..32993 [+], 252295980960  [UniProt] hypothetical protein
38-33219..33449 [-], 231295980961  [UniProt] hypothetical protein
39-33446..33868 [-], 423295980962  [UniProt] hypothetical protein
40-34097..34243 [-], 147295980963  [UniProt] hypothetical protein
41-34373..34612 [+], 240295980964  [UniProt] hypothetical protein
42tnpA34668..37586 [-], 2919295980965  [UniProt] putative transposase
43tnpR37590..38144 [-], 555295980966  [UniProt] putative recombinase
44-38363..38554 [-], 192295980967  [UniProt] hypothetical protein
45ermB38499..39236 [-], 738295980968  [UniProt] erythromycin ribosome methylaseAR
46-39361..39444 [-], 84295980969  [UniProt] MLS leader peptide
47-40125..40634 [-], 510295980970  [UniProt] hypothetical protein
48aphA-340910..41704 [-], 795295980971  [UniProt] aminoglycoside phosphotransferase type IIIAR
49-41797..43086 [-], 1290295980972  [UniProt] hypothetical protein
50-43479..44843 [-], 1365295980973  [UniProt] hypothetical protein
51-44892..45278 [-], 387295980974  [UniProt] hypothetical protein
52-45294..45608 [-], 315295980975  [UniProt] hypothetical protein
53-45631..45750 [-], 120295980976  [UniProt] hypothetical protein
54-45924..46430 [-], 507295980977  [UniProt] hypothetical protein
55-46605..47543 [-], 939295980978  [UniProt] hypothetical protein
56-47805..48950 [-], 1146295980979  [UniProt] hypothetical protein
57-49781..50077 [-], 297295980980  [UniProt] hypothetical protein
58-50091..50375 [-], 285295980981  [UniProt] hypothetical protein
59-50450..51835 [-], 1386295980982  [UniProt] hypothetical protein
60-51829..54162 [-], 2334295980983  [UniProt] hypothetical protein
61-54134..55717 [-], 1584295980984  [UniProt] hypothetical protein
62-55672..56181 [-], 510295980985  [UniProt] hypothetical protein
63-56342..56686 [-], 345295980986  [UniProt] hypothetical protein
64-56719..57129 [-], 411295980987  [UniProt] hypothetical protein
65-57757..58365 [+], 609295980988  [UniProt] hypothetical protein
66-58400..59863 [-], 1464295980989  [UniProt] putative conjugal transfer protein
67-59812..60543 [-], 732295980990  [UniProt] putative conjugal transfer protein
68-60527..61108 [-], 582295980991  [UniProt] putative conjugal transfer protein
69-61120..63477 [-], 2358295980992  [UniProt] putative conjugal transfer protein
70-63841..64695 [-], 855295980993  [UniProt] hypothetical protein
71-66852..67340 [-], 489312386591  [UniProt] putative conjugal transfer protein TraG
72-67330..67629 [-], 300312386592  [UniProt] hypothetical protein
73-67911..68747 [-], 837312386593  [UniProt] hypothetical protein
74-68747..69391 [-], 645312386594  [UniProt] hypothetical protein
75-69465..69707 [-], 243312386595  [UniProt] putative caax amino protease family protein
76-69762..70397 [-], 636312386596  [UniProt] hypothetical protein
77-70689..71276 [-], 588312386597  [UniProt] putative caax amino protease family protein
78-71279..71512 [-], 234312386598  [UniProt] hypothetical protein
79-71525..71905 [-], 381312386599  [UniProt] hypothetical protein
80-71898..72347 [-], 450312386600  [UniProt] hypothetical protein
81-72331..73689 [-], 1359312386601  [UniProt] putative DNA methylase
82-73788..74201 [-], 414312386602  [UniProt] hypothetical protein
83-74303..74569 [-], 267312386603  [UniProt] putative replication initiator protein A
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins83Fasta
(1) Mingoia M; Tili E; Manso E; Varaldo PE; Montanari MP (2011). Heterogeneity of Tn5253-like composite elements in clinical Streptococcus pneumoniae isolates. Antimicrob Agents Chemother. 55(4):1453-9. [PudMed:21263055] experimental
 
experimental experimental literature