ICEberg
ICEberg
ICEberg ID37
NameICEPalBan1
FamilySXT/R391
OrganismProvidencia alcalifaciens Ban1
Size (bp)96676
GC content [Genome] (%)47.1
Insertion siteprfC
FunctionAntibiotic resistance genes: floR, strBA, sul2, dfrA1; Toxin-antitoxin system
Species that ICE can be transferred to-
Nucleotide SequenceGQ463139 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..96676
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICEPalBan1 form GQ463139
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1ICEPALBAN1_00014..126 [+], 123259156097  [UniProt] peptide chain release factor 3 (RF-3)
2ICEPALBAN1_0002616..753 [+], 138259156139  [UniProt] conserved domain protein
3ICEPALBAN1_00053046..4287 [-], 1242259156133  [UniProt] integrase
4ICEPALBAN1_00064289..4558 [-], 270259156176  [UniProt] conserved hypothetical protein
5ICEPALBAN1_00074561..5535 [-], 975259156164  [UniProt] conserved hypothetical protein
6ICEPALBAN1_00085631..5798 [+], 168259156138  [UniProt] hypothetical protein
7ICEPALBAN1_00096000..6443 [+], 444259156150  [UniProt] conserved hypothetical protein
8ICEPALBAN1_00106454..7626 [-], 1173259156121  [UniProt] protein UmuC
9ICEPALBAN1_00117910..8503 [+], 594259156108  [UniProt] transposase, IS3 family, interruption
10ICEPALBAN1_00128617..11595 [+], 2979259156118  [UniProt] transposase
11ICEPALBAN1_001312013..13506 [+], 1494259156110  [UniProt] iscr2 transposase
12ICEPALBAN1_001413537..14421 [+], 885259156113  [UniProt] conserved hypothetical proteinAR
13ICEPALBAN1_001514638..15852 [+], 1215259156083  [UniProt] florfenicol/chloramphenicol resistance proteinAR
14ICEPALBAN1_001816296..16835 [+], 540259156124  [UniProt] truncated transposase
15ICEPALBAN1_001716807..17637 [-], 831259156117  [UniProt] streptomycin resistance protein BAR
16ICEPALBAN1_001917643..18446 [-], 804259156123  [UniProt] streptomycin 3''-kinaseAR
17folP18507..19322 [-], 816259156162  [UniProt] dihydropteroate synthaseAR
18ICEPALBAN1_002119793..21406 [+], 1614259156170  [UniProt] TnpA
19ICEPALBAN1_002221749..22018 [-], 270259156105  [UniProt] protein UmuC
20ICEPALBAN1_002322026..22475 [-], 450259156159  [UniProt] protein UmuD
21ICEPALBAN1_002422474..22626 [+], 153259156151  [UniProt] hypothetical protein
22ICEPALBAN1_002523131..24036 [+], 906259156119  [UniProt] exonuclease, RNase T and DNA polymerase III
23ICEPALBAN1_002624250..24549 [+], 300259156086  [UniProt] conserved hypothetical protein
24ICEPALBAN1_002724867..25790 [+], 924259156178  [UniProt] conserved hypothetical protein
25ICEPALBAN1_002825904..28333 [+], 2430259156157  [UniProt] N-6 DNA methylaseVF
26ICEPALBAN1_002928333..29643 [+], 1311259156142  [UniProt] type I restriction-modification protein
27ICEPALBAN1_003029653..30816 [+], 1164259156131  [UniProt] conserved hypothetical protein
28ICEPALBAN1_003130831..33848 [+], 3018259156104  [UniProt] type I restriction-modification system restriction subunitVF
29ICEPALBAN1_003233871..34956 [+], 1086259156089  [UniProt] conserved hypothetical protein
30ICEPALBAN1_003334979..35530 [+], 552259156099  [UniProt] conserved hypothetical protein
31ICEPALBAN1_003435660..35833 [+], 174259156088  [UniProt] conserved hypothetical protein
32ICEPALBAN1_003535835..36203 [+], 369259156160  [UniProt] membrane-bound metal-dependent hydrolase
33ICEPALBAN1_003636213..37367 [+], 1155259156161  [UniProt] conserved hypothetical protein
34ICEPALBAN1_003737360..38550 [+], 1191259156145  [UniProt] conserved hypothetical protein
35ICEPALBAN1_003838551..39264 [+], 714259156091  [UniProt] conserved hypothetical protein
36ICEPALBAN1_003939381..41531 [+], 2151259156128  [UniProt] conjugative relaxase
37ICEPALBAN1_004041579..43399 [+], 1821259156114  [UniProt] conjugative coupling factor
38ICEPALBAN1_004143409..43969 [+], 561259156095  [UniProt] conserved hypothetical protein
39ICEPALBAN1_004243956..44591 [+], 636259156090  [UniProt] putative conjugation coupling factor
40ICEPALBAN1_004344617..44895 [-], 279259156082  [UniProt] transcriptional regulator, XRE family
41ICEPALBAN1_004444892..45215 [-], 324259156101  [UniProt] conserved hypothetical protein
42traL45396..45677 [+], 282259156177  [UniProt] type IV conjugative transfer system protein TraL
43ICEPALBAN1_004645674..46300 [+], 627259156109  [UniProt] sex pilus assembly
44ICEPALBAN1_004746284..47180 [+], 897259156107  [UniProt] TraK
45ICEPALBAN1_004847183..48472 [+], 1290259156171  [UniProt] sex pilus assembly
46ICEPALBAN1_004948547..49119 [+], 573259156112  [UniProt] sex pilus assembly
47ICEPALBAN1_005049116..49502 [+], 387259156137  [UniProt] TraA
48ICEPALBAN1_005149573..50514 [+], 942259156087  [UniProt] conserved hypothetical proteinTA
49ICEPALBAN1_005250507..51445 [+], 939259156084  [UniProt] yncTA
50ICEPALBAN1_005351577..52269 [+], 693259156106  [UniProt] DsbC
51traC52269..54668 [+], 2400259156100  [UniProt] type-IV secretion system protein TraC
52ICEPALBAN1_005554661..55008 [+], 348259156165  [UniProt] conserved hypothetical protein
53ICEPALBAN1_005654992..55504 [+], 513259156166  [UniProt] conjugation signal peptidase
54ICEPALBAN1_005755515..56639 [+], 1125259156146  [UniProt] sex pilus assembly
55ICEPALBAN1_005856623..57651 [+], 1029259156172  [UniProt] sex pilus assembly
56ICEPALBAN1_005957654..61346 [+], 3693259156130  [UniProt] mating pair stabilization
57ICEPALBAN1_006061571..62995 [-], 1425259156116  [UniProt] transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain
58ICEPALBAN1_006163035..63175 [-], 141259156167  [UniProt] hypothetical protein
59ICEPALBAN1_006263190..64068 [+], 879259156173  [UniProt] phenazine biosynthesis protein PhzF family
60ICEPALBAN1_006364041..65036 [+], 996259156127  [UniProt] protein of unknown function DUF6, transmembrane
61ICEPALBAN1_006465033..65428 [+], 396259156103  [UniProt] endoribonuclease L-PSP, putative
62ICEPALBAN1_006565453..65914 [+], 462259156168  [UniProt] YbaK/prolyl-tRNA synthetase associated region
63ICEPALBAN1_006665959..66552 [-], 594259156148  [UniProt] maltose O-acetyltransferase (maltose transacetylase)
64panB66607..67452 [-], 846259156132  [UniProt] 3-methyl-2-oxobutanoate hydroxymethyltransferase
65ICEPALBAN1_006867461..68084 [-], 624259156085  [UniProt] lysine exporter protein
66ICEPALBAN1_006968213..68665 [+], 453259156115  [UniProt] transcriptional regulator
67ICEPALBAN1_007068913..69515 [-], 603259156098  [UniProt] conserved hypothetical protein
68ICEPALBAN1_007169883..70209 [+], 327259156126  [UniProt] conserved hypothetical protein
69ICEPALBAN1_007270225..70662 [+], 438259156153  [UniProt] single-strand binding protein familyVF
70ICEPALBAN1_007370723..71541 [+], 819259156120  [UniProt] phage recombination protein Bet
71ICEPALBAN1_007471624..71767 [+], 144259156136  [UniProt] hypothetical protein
72ICEPALBAN1_007571828..72844 [+], 1017259156111  [UniProt] YqaJ viral recombinase family
73ICEPALBAN1_007673054..74013 [+], 960259156134  [UniProt] ATPase associated with various cellular activities, AAA_5
74ICEPALBAN1_007774013..74780 [+], 768259156092  [UniProt] conserved hypothetical protein
75ICEPALBAN1_007874879..75832 [+], 954259156149  [UniProt] conserved hypothetical protein
76ICEPALBAN1_007975894..76334 [+], 441259156174  [UniProt] conserved hypothetical protein
77ICEPALBAN1_008076404..78059 [+], 1656259156141  [UniProt] von Willebrand factor, type A
78radC78144..78641 [+], 498259156144  [UniProt] DNA repair protein RadCVF
79ICEPALBAN1_008278641..78982 [+], 342259156147  [UniProt] conserved hypothetical protein
80ICEPALBAN1_008379074..80147 [+], 1074259156156  [UniProt] phage P4 alpha, zinc-binding domain protein
81ICEPALBAN1_008480237..80944 [+], 708259156143  [UniProt] conserved hypothetical protein
82ICEPALBAN1_008681216..81620 [+], 405259156163  [UniProt] glyoxalase/bleomycin resistance protein/dioxygenase
83ICEPALBAN1_008581617..82318 [-], 702259156169  [UniProt] conserved hypothetical protein
84ICEPALBAN1_008782418..82780 [-], 363259156125  [UniProt] conserved hypothetical protein
85ICEPALBAN1_008882851..83261 [-], 411259156102  [UniProt] membrane associated protein containing xre-family DNA-binding HTH domain
86ICEPALBAN1_008983459..83884 [-], 426259156158  [UniProt] conserved hypothetical protein
87folA83989..84462 [-], 474259156175  [UniProt] dihydrofolate reductaseAR
88ICEPALBAN1_009185680..85820 [-], 141259156093  [UniProt] hypothetical protein
89ICEPALBAN1_009385966..86910 [+], 945259156129  [UniProt] conserved hypothetical protein
90ICEPALBAN1_009486913..88301 [+], 1389259156081  [UniProt] sex pilus assembly
91ICEPALBAN1_009588305..91874 [+], 3570259156122  [UniProt] sex pilus assembly
92ICEPALBAN1_009691907..92338 [-], 432259156152  [UniProt] EexR2
93ICEPALBAN1_009792396..92929 [-], 534259156094  [UniProt] transcriptional activator
94ICEPALBAN1_009892926..93225 [-], 300259156179  [UniProt] SetD
95ICEPALBAN1_009993222..93770 [-], 549259156096  [UniProt] lytic transglycosylase, catalytic
96ICEPALBAN1_010093757..94419 [-], 663259156154  [UniProt] conserved hypothetical protein
97ICEPALBAN1_010194406..95275 [-], 870259156155  [UniProt] conserved hypothetical protein
98ICEPALBAN1_010295331..95582 [-], 252259156140  [UniProt] SetQ
99ICEPALBAN1_010395700..96347 [+], 648259156135  [UniProt] HTH-type transcriptional regulator for conjugative element R391
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
regulation Gene may play role in regulation of transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins99Fasta
(1) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216] in_silico
(2) Bordeleau E; Brouillette E; Robichaud N; Burrus V (2010). Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae. Environ Microbiol. 12(2):510-23. [PudMed:19888998] experimental
(3) Marrero J; Waldor MK (2007). The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 189(8):3302-5. [PudMed:17307849] experimental
 
experimental experimental literature
in_silico in silico analysis literature