ICEberg
ICEberg ID375
NameICEPm1
FamilyUnclassified
OrganismProteus mirabilis HI4320
Size (bp)92463
GC content [Genome] (%)45 [38]
Insertion sitetRNA-Phe (PMIt057)
FunctionProteus toxic agglutinin
Species that ICE can be transferred to-
Nucleotide SequenceAM942759 (complete ICE sequence in this genome)
Replicon chromosome (4063606 bp, Project:12624) [NC_010554]
Genome coordinates2793762..2886224
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICEPm1 form AM942759
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1fxsA2788843..2789349 [-], 507194683879 membrane protein FxsA (suppressor of F exclusion of phage T7)
2aspA2789722..2791146 [+], 1425194683880 aspartate ammonia-lyase
3dcuA2791305..2792630 [+], 1326194683881 anaerobic C4-dicarboxylate transporter
4PMI25482792823..2793395 [+], 573194683882 conserved hypothetical protein
5PMI25492793999..2795069 [-], 1071194683883  [UniProt] putative phage integrase
6PMI25502795085..2796677 [-], 1593194683884  [UniProt] putative helicase
7PMI25512796853..2797179 [-], 327194683885  [UniProt] putative membrane protein
8PMI25522797323..2798324 [-], 1002194683886  [UniProt] putative plasmid-related protein
9PMI25532798409..2798708 [-], 300194683887  [UniProt] conserved hypothetical protein
10PMI25542798718..2799692 [-], 975194683888  [UniProt] putative DNA primase
11PMI25552799845..2800492 [-], 648194683889  [UniProt] hypothetical protein
12PMI25562800492..2801004 [-], 513194683890  [UniProt] hypothetical protein
13PMI25572801115..2801471 [-], 357194683891  [UniProt] conserved hypothetical protein
14PMI25582801568..2801990 [-], 423194683892  [UniProt] hypothetical protein
15PMI25592802157..2802534 [-], 378194683893  [UniProt] hypothetical protein
16PMI25602802556..2802831 [-], 276194683894  [UniProt] hypothetical protein
17PMI25612802881..2803075 [-], 195194683895  [UniProt] hypothetical protein
18PMI25622803142..2803270 [-], 129194683896  [UniProt] hypothetical protein
19PMI25632803267..2803878 [-], 612194683897  [UniProt] putative exported protein
20PMI25642803886..2804794 [-], 909194683898  [UniProt] conserved hypothetical protein
21PMI25652804931..2805110 [-], 180194683899  [UniProt] hypothetical protein
22PMI25662805195..2805416 [+], 222194683900  [UniProt] hypothetical protein
23PMI25672805837..2806076 [-], 240194683901  [UniProt] conserved hypothetical protein
24PMI25682806076..2806375 [-], 300194683902  [UniProt] hypothetical protein
25PMI25692806718..2807125 [+], 408194683903  [UniProt] putative membrane protein
26PMI25702807168..2808679 [-], 1512194683904  [UniProt] putative membrane protein
27PMI25712808679..2809017 [-], 339194683905  [UniProt] putative membrane protein
28PMI25722809018..2810457 [-], 1440194683906  [UniProt] putative exported protein
29PMI25732810475..2811449 [-], 975194683907  [UniProt] putative exported protein
30PMI25742811446..2811886 [-], 441194683908  [UniProt] putative lipoprotein
31PMI25752811965..2814190 [-], 2226194683909  [UniProt] putative adhesin
32PMI25762814285..2817152 [-], 2868194683910  [UniProt] conserved hypothetical protein
33PMI25772817152..2817589 [-], 438194683911  [UniProt] putative lipoprotein
34PMI25782817586..2818071 [-], 486194683912  [UniProt] hypothetical protein
35PMI25792818068..2819564 [-], 1497194683913  [UniProt] putative exported protein
36PMI25802819561..2820457 [-], 897194683914  [UniProt] putative exported protein
37PMI25812820454..2821098 [-], 645194683915  [UniProt] putative exported protein
38PMI25822821091..2821507 [-], 417194683916  [UniProt] putative membrane protein
39PMI25832821520..2821933 [-], 414194683917  [UniProt] putative membrane protein
40PMI25842821930..2822169 [-], 240194683918  [UniProt] putative membrane protein
41PMI25852822166..2822492 [-], 327194683919  [UniProt] putative exported protein
42PMI25862822639..2823247 [+], 609194683920  [UniProt] conserved hypothetical protein
43PMI25872823335..2824084 [-], 750194683921  [UniProt] putative membrane protein
44PMI25882824071..2826218 [-], 2148194683922  [UniProt] putative plasmid transfer protein
45PMI25892826377..2826574 [-], 198194683923  [UniProt] putative subunit of ATP synthase
46PMI25902826574..2827128 [-], 555194683924  [UniProt] putative exported protein
47PMI25912827118..2827756 [-], 639194683925  [UniProt] putative lytic transglycosylase
48PMI25922827769..2828506 [-], 738194683926  [UniProt] putative exported protein
49PMI25932828517..2829257 [-], 741194683927  [UniProt] putative membrane protein
50PMI25942829254..2829916 [-], 663194683928  [UniProt] putative conjugal transfer proteinVF
51PMI25952830088..2830525 [-], 438pseudogene IS1004 transposase (pseudogene)
52PMI25962830683..2832671 [-], 1989194683929  [UniProt] putative siderophore TonB-dependent receptor
53PMI25972832928..2834157 [+], 1230194683930  [UniProt] MFS-family transporter
54PMI25982834189..2834926 [+], 738194683931  [UniProt] conserved hypothetical protein
55PMI25992834947..2841051 [+], 6105194683932  [UniProt] putative non-ribosomal peptide synthase (putative siderophore synthase)VF
56nrpS2841064..2850279 [+], 9216194683933  [UniProt] putative non-ribosomal peptide synthase (putative siderophore synthase)VF
57nrpU2850279..2851367 [+], 1089194683934  [UniProt] putative siderophore biosynthetic proteinVF
58nrpT2851367..2852140 [+], 774194683935  [UniProt] putative siderophore biosynthetic protein (thioesterase)VF
59nrpA2852159..2853925 [+], 1767194683936  [UniProt] putative siderophore ABC transporter, ATP-binding/permease protein
60nrpB2853918..2855645 [+], 1728194683937  [UniProt] putative siderophore ABC transporter, ATP-binding/permease protein
61nrpG2855658..2856407 [+], 750194683938  [UniProt] putative 4'-phosphopantetheinyl transferase
62irpP2856577..2856921 [+], 345pseudogene conserved hypothetical protein (pseudogene)
63PMI26072857189..2857497 [+], 309pseudogene conserved hypothetical protein (fragment)
64PMI26082857629..2857817 [+], 189194683939  [UniProt] putative prophage regulatory proteinVF
65PMI26092857842..2857976 [+], 135pseudogene conserved hypothetical protein (fragment)
66insN2857976..2858278 [+], 303194683940  [UniProt] transposase for insertion sequence element IS911VF
67PMI26112858305..2860431 [+], 2127pseudogene putative transposase (pseudogene)
68PMI26122859139..2860203 [+], 1065194683941  [UniProt] putative transposase
69PMI26142860495..2860599 [+], 105pseudogene conserved hypothetical protein (fragment)
70PMI26152860952..2861873 [-], 922pseudogene antirestriction protein (pseudogene)
71PMI26182862321..2864690 [-], 2370194683942  [UniProt] TonB-dependent receptor
72PMI26192864701..2866794 [-], 2094194683943  [UniProt] TonB-dependent receptor
73PMI26202867161..2867442 [+], 282pseudogene transposase (fragment)
74PMI26212868101..2868304 [-], 204pseudogene putative membrane protein (fragment)
75PMI26222868303..2868461 [-], 159pseudogene fimbrial usher protein (fragment)
76PMI26232868545..2869268 [-], 724pseudogene fimbrial chaperone chaperone (pseudogene)
77PMI26242869343..2869753 [-], 411pseudogene fimbrial subunit (fragment)
78PMI26252870969..2871232 [+], 264pseudogene ornithine decarboxylase (fragment)
79PMI26262871244..2871662 [-], 419pseudogene putative exported protein (fragment)
80PMI26272872070..2872993 [-], 924194683944  [UniProt] putative transposase
81PMI26282873014..2873481 [-], 468194683945  [UniProt] conserved hypothetical protein
82PMI26292873465..2873671 [-], 207194683946  [UniProt] hypothetical protein
83PMI26302874365..2876419 [-], 2055194683947  [UniProt] topoisomerase
84PMI26312876429..2876965 [-], 537194683948  [UniProt] putative lipoprotein
85PMI26322877013..2877717 [-], 705194683949  [UniProt] conserved hypothetical protein
86PMI26332878000..2878518 [+], 519194683950  [UniProt] conserved hypothetical protein
87PMI26342878555..2878716 [+], 162194683951  [UniProt] hypothetical protein
88PMI26352878804..2880099 [-], 1296194683952  [UniProt] conserved hypothetical protein
89PMI26362880226..2880510 [-], 285194683953  [UniProt] conserved hypothetical protein
90PMI26372880500..2881090 [-], 591194683954  [UniProt] conserved hypothetical protein
91PMI26382881005..2881517 [-], 513194683955  [UniProt] hypothetical protein
92PMI26392881615..2883264 [-], 1650194683956  [UniProt] conserved hypothetical protein
93PMI26402883279..2884631 [-], 1353194683957  [UniProt] DNA helicase
94PMI26412884624..2885355 [-], 732194683958  [UniProt] conserved hypothetical protein
95PMI26422885352..2886224 [-], 873194683959  [UniProt] chromosome partitioning related protein
96PMI26432886551..2886685 [-], 135pseudogene putative integrase (fragment)
97PMI26442886711..2887889 [-], 1179194683960 putative membrane protein
98PMI26452887886..2888482 [-], 597194683961 putative membrane protein
99PMI26462888961..2889590 [+], 630194683962 putative membrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins77Fasta
(1) Flannery EL; Antczak SM; Mobley HL (2011). Self-Transmissibility of the Integrative and Conjugative Element ICEPm1 between Clinical Isolates Requires a Functional Integrase, Relaxase, and Type IV Secretion System. J Bacteriol. 193(16):4104-12. [PudMed:21665966] experimental
(2) Flannery EL; Mody L; Mobley HL (2009). Identification of a modular pathogenicity island that is widespread among urease-producing uropathogens and shares features with a diverse group of mobile elements. Infect Immun. 77(11):4887-94. [PudMed:19687197] experimental
 
experimental experimental literature