ICEberg
ICEberg ID386
NameCTnPg1-a
FamilyCTnDOT/ERL
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)45100
GC content [Genome] (%)45 [48]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, Project:19051) [NC_010729]
Genome coordinates57961..103060
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of CTnPg1-a form AP009380
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1PGN_004253288..54142 [-], 855188593586 probable phosphatidate cytidylyltransferase
2PGN_004354171..56192 [-], 2022188593587 putative transmembrane AAA-metalloprotease FtsH
3PGN_004456393..57496 [-], 1104188593588 GTP-binding protein
4PGN_004557515..57679 [-], 165188593589 conserved hypothetical protein
5PGN_004658549..58815 [+], 267188593590  [UniProt]  [KEGG]hypothetical protein
6PGN_004758828..59046 [+], 219188593591  [UniProt]  [KEGG]conserved hypothetical protein
7PGN_004859059..59475 [+], 417188593592  [UniProt]  [KEGG]conserved hypothetical protein
8PGN_004959497..60027 [+], 531188593593  [UniProt]  [KEGG]probable anti-restriction protein
9PGN_005060044..61318 [+], 1275188593594  [UniProt]  [KEGG]conserved hypothetical protein
10PGN_005161345..61599 [+], 255188593595  [UniProt]  [KEGG]conserved hypothetical protein
11PGN_005261604..61834 [+], 231188593596  [UniProt]  [KEGG]hypothetical protein
12PGN_005362092..63318 [+], 1227188593597  [UniProt]  [KEGG]conserved hypothetical protein
13PGN_005463320..63724 [+], 405188593598  [UniProt]  [KEGG]hypothetical protein
14PGN_005563785..64300 [-], 516188593599  [UniProt]  [KEGG]probable lysozyme
15PGN_005664284..64745 [-], 462188593600  [UniProt]  [KEGG]probable conserved protein found in conjugate transposon
16traP64770..65624 [-], 855188593601  [UniProt]  [KEGG]probable conserved protein found in conjugate transposon TraP
17PGN_005865624..66208 [-], 585188593602  [UniProt]  [KEGG]probable conserved protein found in conjugate transposon
18traN66210..67130 [-], 921188593603  [UniProt]  [KEGG]conserved protein found in conjugate transposon TraN
19traM67169..68536 [-], 1368188593604  [UniProt]  [KEGG]conserved protein found in conjugate transposon TraM
20PGN_006168487..68819 [-], 333188593605  [UniProt]  [KEGG]hypothetical protein
21traK68816..69439 [-], 624188593606  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraK
22traJ69459..70535 [-], 1077188593607  [UniProt]  [KEGG]conserved transmembrane protein found in conjugate transposon TraJ
23traI70538..71167 [-], 630188593608  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraI
24traG71302..73803 [-], 2502188593609  [UniProt]  [KEGG]conserved protein found in conjugate transposon TraG
25traF73800..74177 [-], 378188593610  [UniProt]  [KEGG]probable conserved transmembrane protein found in conjugate transposon TraF
26traF74182..74481 [-], 300188593611  [UniProt]  [KEGG]probable conserved transmembrane protein found in conjugate transposon TraE
27PGN_006874657..75244 [-], 588188593612  [UniProt]  [KEGG]hypothetical protein
28traA75232..75972 [-], 741188593613  [UniProt]  [KEGG]probable conserved protein found in conjugate transposon TraA
29PGN_007076002..76592 [-], 591188593614  [UniProt]  [KEGG]hypothetical protein
30PGN_007176589..76942 [-], 354188593615  [UniProt]  [KEGG]hypothetical protein
31PGN_007276968..77399 [-], 432188593616  [UniProt]  [KEGG]hypothetical protein
32traA77383..78165 [-], 783188593617  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraA
33PGN_007478954..79367 [+], 414188593618  [UniProt]  [KEGG]conserved hypothetical protein
34PGN_007579352..80587 [+], 1236188593619  [UniProt]  [KEGG]conserved hypothetical protein
35PGN_007680770..82779 [+], 2010188593620  [UniProt]  [KEGG]putative mobilization protein TraG family
36PGN_007782878..83033 [+], 156188593621  [UniProt]  [KEGG]hypothetical protein
37PGN_007883075..83287 [+], 213188593622  [UniProt]  [KEGG]hypothetical protein
38PGN_007983317..84354 [+], 1038188593623  [UniProt]  [KEGG]conserved hypothetical protein with DUF1016 domain
39PGN_008084397..84723 [-], 327188593624  [UniProt]  [KEGG]probable tetracycline resistance element mobilization regulatory protein RteC
40PGN_008185010..86368 [-], 1359188593625  [UniProt]  [KEGG]putative Na driven multidrug efflux pump
41PGN_008286465..87313 [-], 849188593626  [UniProt]  [KEGG]probable transcriptional regulator AraC family
42PGN_008387598..88992 [+], 1395188593627  [UniProt]  [KEGG]conserved hypothetical protein
43PGN_008489027..91156 [+], 2130188593628  [UniProt]  [KEGG]DNA topoisomerase I
44PGN_008591296..91727 [+], 432188593629  [UniProt]  [KEGG]hypothetical protein
45PGN_008691714..97200 [+], 5487188593630  [UniProt]  [KEGG]putative DNA methylase
46PGN_008797257..99167 [-], 1911188593631  [UniProt]  [KEGG]conserved hypothetical protein
47PGN_008899167..99376 [-], 210188593632  [UniProt]  [KEGG]putative transcriptional regulator
48PGN_008999529..99849 [-], 321188593633  [UniProt]  [KEGG]hypothetical protein
49PGN_009099833..100186 [-], 354188593634  [UniProt]  [KEGG]hypothetical protein
50PGN_0091100407..100685 [+], 279188593635  [UniProt]  [KEGG]hypothetical protein
51PGN_0092100714..101025 [+], 312188593636  [UniProt]  [KEGG]conserved hypothetical protein
52PGN_0093101075..101440 [-], 366188593637  [UniProt]  [KEGG]conserved hypothetical protein
53PGN_0094101455..102690 [-], 1236188593638  [UniProt]  [KEGG]putative bacteriophage integrase
54PGN_0095102733..102882 [-], 150188593639  [UniProt]  [KEGG]hypothetical protein
55PGN_0096103084..104424 [-], 1341188593640 aspartate kinase
56PGN_0097104442..105182 [-], 741188593641 putative cell-division ATP-binding protein
57PGN_0098105346..105519 [-], 174188593642 hypothetical protein
58PGN_0099105575..106588 [+], 1014188593643 probable peptidase
59PGN_0100106598..107746 [+], 1149188593644 diaminopimelate decarboxylase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]