ICEberg
ICEberg ID387
NameCTnPg1-b
FamilyUnclassified
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)10348
GC content [Genome] (%)46 [48]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, Project:19051) [NC_010729]
Genome coordinates1429021..1439368
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of CTnPg1-b form AP009380
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1PGN_12761425416..1426501 [-], 1086188594820 transposase in ISPg1
2PGN_12771426697..1426867 [+], 171188594821 conserved hypothetical protein
3PGN_12781427362..1428150 [+], 789188594822 partial transposase in ISPg3
4PGN_12791428190..1428510 [+], 321188594823 partial transposase in ISPg3
5PGN_12801428497..1428928 [-], 432188594824 partial transposase in ISPg1
6traM1429021..1430160 [+], 1140188594825  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraM
7traN1430199..1431119 [+], 921188594826  [UniProt]  [KEGG]conserved protein found in conjugate transposon TraN
8traO1431151..1431705 [+], 555188594827  [UniProt]  [KEGG]conserved protein found in conjugate transposon TraO
9traP1431705..1432559 [+], 855188594828  [UniProt]  [KEGG]putative DNA primase involved in conjugation TraP
10traQ1432584..1433045 [+], 462188594829  [UniProt]  [KEGG]conserved protein found in conjugate transposon TraQ
11PGN_12861433029..1433544 [+], 516188594830  [UniProt]  [KEGG]probable lysozyme
12PGN_12871433605..1434009 [-], 405188594831  [UniProt]  [KEGG]conserved hypothetical protein
13PGN_12881434011..1435237 [-], 1227188594832  [UniProt]  [KEGG]conserved hypothetical protein
14PGN_12891435495..1435725 [-], 231188594833  [UniProt]  [KEGG]conserved hypothetical protein
15PGN_12901435730..1435984 [-], 255188594834  [UniProt]  [KEGG]conserved hypothetical protein
16PGN_12911436011..1437285 [-], 1275188594835  [UniProt]  [KEGG]conserved hypothetical protein related to phage
17PGN_12921437302..1437832 [-], 531188594836  [UniProt]  [KEGG]probable anti-restriction protein
18PGN_12931437854..1438270 [-], 417188594837  [UniProt]  [KEGG]conserved hypothetical protein
19PGN_12941438283..1438501 [-], 219188594838  [UniProt]  [KEGG]conserved hypothetical protein
20PGN_12951438514..1438780 [-], 267188594839  [UniProt]  [KEGG]hypothetical protein
21PGN_12961439480..1441498 [-], 2019188594840 putative OmpA family protein
22PGN_12971441520..1442113 [-], 594188594841 conserved hypothetical protein
23PGN_12981442133..1442552 [-], 420188594842 conserved hypothetical protein
24PGN_12991442549..1442665 [-], 117188594843 hypothetical protein
25PGN_13001442769..1443455 [-], 687188594844 probable transcriptional regulator
26PGN_13011443472..1443828 [-], 357188594845 probable transcriptional regulator
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins15Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]