ICEberg
ICEberg ID388
NameCTnPg2
FamilyUnclassified
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)27193
GC content [Genome] (%)41 [48]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, Project:19051) [NC_010729]
Genome coordinates627916..655108
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of CTnPg2 form AP009380
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1PGN_0574624175..624516 [+], 342188594118 conserved hypothetical protein
2PGN_0575624688..625749 [-], 1062188594119 transposase in ISPg1
3PGN_0576625842..625943 [+], 102188594120 hypothetical protein
4PGN_0577626732..627817 [+], 1086188594121 transposase in ISPg1
5PGN_0578627916..628137 [-], 222188594122  [UniProt]  [KEGG]conserved hypothetical protein found in conjugate transposon
6PGN_0579628159..629265 [+], 1107188594123  [UniProt]  [KEGG]conserved hypothetical protein
7PGN_0580629353..634965 [+], 5613188594124  [UniProt]  [KEGG]conserved hypothetical protein
8PGN_0581635151..636635 [+], 1485188594125  [UniProt]  [KEGG]conserved hypothetical protein
9PGN_0582636731..638812 [+], 2082188594126  [UniProt]  [KEGG]DNA topoisomerase I
10PGN_0583638954..640594 [+], 1641188594127  [UniProt]  [KEGG]conserved hypothetical protein
11PGN_0584640869..642197 [-], 1329188594128  [UniProt]  [KEGG]conserved hypothetical protein
12PGN_0585642231..643133 [+], 903188594129  [UniProt]  [KEGG]transposase in ISPg3
13PGN_0586643172..643486 [+], 315188594130  [UniProt]  [KEGG]conserved hypothetical protein
14PGN_0587643570..644655 [+], 1086188594131  [UniProt]  [KEGG]transposase in ISPg1
15PGN_0588644756..645304 [+], 549188594132  [UniProt]  [KEGG]conserved hypothetical protein
16PGN_0589645609..645830 [+], 222188594133  [UniProt]  [KEGG]conserved hypothetical protein
17PGN_0590646047..647105 [+], 1059188594134  [UniProt]  [KEGG]putative Fic family protein
18PGN_0591647136..648518 [-], 1383188594135  [UniProt]  [KEGG]conserved hypothetical protein
19traQ648638..649075 [-], 438188594136  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraQ
20traO649095..649679 [-], 585188594137  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraO
21traN649684..650619 [-], 936188594138  [UniProt]  [KEGG]conserved protein found in conjugate transposon TraN
22traM650693..652054 [-], 1362188594139  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraM
23PGN_0596652051..652314 [-], 264188594140  [UniProt]  [KEGG]conserved hypothetical protein found in conjugate transposon
24traK652318..652941 [-], 624188594141  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraK
25traJ652959..653945 [-], 987188594142  [UniProt]  [KEGG]conserved transmembrane protein found in conjugate transposon TraJ
26traI653966..654589 [-], 624188594143  [UniProt]  [KEGG]putative conserved protein found in conjugate transposon TraI
27PGN_0600654641..655108 [-], 468188594144  [UniProt]  [KEGG]conserved hypothetical protein
28PGN_0601655186..655605 [-], 420188594145 conserved hypothetical protein
29PGN_0602655769..656854 [+], 1086188594146 transposase in ISPg1
30PGN_0603657387..657560 [-], 174188594147 hypothetical protein
31PGN_0604657990..658472 [+], 483188594148 ferritin
32PGN_0605658720..659805 [-], 1086188594149 transposase in ISPg1
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins23Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]