ICEberg
ICEberg ID389
NameCTnPg3
FamilyUnclassified
OrganismPorphyromonas gingivalis ATCC 33277
Size (bp)17585
GC content [Genome] (%)39 [48]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAP009380 (complete ICE sequence in this genome)
Replicon chromosome (2354886 bp, Project:19051) [NC_010729]
Genome coordinates1021623..1039207
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of CTnPg3 form AP009380
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1PGN_09151016793..1018340 [-], 1548188594459 conserved hypothetical protein
2dnaK1018923..1020845 [+], 1923188594460 molecular chaperone DnaK
3PGN_09171021623..1022885 [+], 1263188594461  [UniProt]  [KEGG]tyrosine type site-specific recombinaseVF
4PGN_09181023531..1024616 [+], 1086188594462  [UniProt]  [KEGG]transposase in ISPg1
5PGN_09191025094..1025738 [-], 645188594463  [UniProt]  [KEGG]hypothetical protein
6PGN_09201026238..1026375 [+], 138188594464  [UniProt]  [KEGG]putative partial excisionase
7PGN_09211026426..1026593 [+], 168188594465  [UniProt]  [KEGG]hypothetical protein
8PGN_09221026608..1027813 [+], 1206188594466  [UniProt]  [KEGG]conserved hypothetical protein
9PGN_09231028044..1028931 [+], 888188594467  [UniProt]  [KEGG]putative DNA primase
10PGN_09241029061..1029423 [+], 363188594468  [UniProt]  [KEGG]mobilization protein
11PGN_09251029413..1030354 [+], 942188594469  [UniProt]  [KEGG]putative mobilization protein
12PGN_09261030380..1031102 [+], 723188594470  [UniProt]  [KEGG]conserved hypothetical protein
13PGN_09271031232..1031435 [+], 204188594471  [UniProt]  [KEGG]conserved hypothetical protein
14PGN_09281031507..1032715 [+], 1209188594472  [UniProt]  [KEGG]conserved hypothetical protein
15PGN_09291032705..1034606 [+], 1902188594473  [UniProt]  [KEGG]conserved hypothetical protein
16PGN_09301034802..1035848 [+], 1047188594474  [UniProt]  [KEGG]hypothetical protein
17PGN_09311035904..1036683 [+], 780188594475  [UniProt]  [KEGG]conserved hypothetical protein
18PGN_09321037241..1037696 [+], 456188594476  [UniProt]  [KEGG]probable GCN5-related N-acetyltransferase
19PGN_09331037750..1039207 [+], 1458188594477  [UniProt]  [KEGG]probable transcriptional regulator
20PGN_09341039361..1040263 [+], 903188594478 transposase in ISPg3
21PGN_09351040509..1042389 [+], 1881188594479 conserved hypothetical protein
22PGN_09361042630..1043583 [+], 954188594480 putative glycerate dehydrogenase
23PGN_09371043701..1043811 [+], 111188594481 hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Naito M; Hirakawa H; Yamashita A; Ohara N; Shoji M; Yukitake H; Nakayama K; Toh H; Yoshimura F; Kuhara S; Hattori M; Hayashi T; Nakayama K (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]