ICEberg
ICEberg ID396
NameICEHpyP12-1
FamilyUnclassified
OrganismHelicobacter pylori P12
Size (bp)42705
GC content [Genome] (%)34 [38]
Insertion sitetype I R-M system R protein (HPP12_0436)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001217 (complete ICE sequence in this genome)
Replicon chromosome (1673813 bp, Project:32291) [NC_011498]
Genome coordinates451991..494695
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICEHpyP12-1 form CP001217
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1hsdS-1448002..449183 [-], 1182210132600 type I R-M system S protein
2hsdM-1449176..450807 [-], 1632210132601 type I R-M system M protein
3HPP12_0437452423..453496 [+], 1074210132602  [UniProt]  [KEGG]integrase/recombinase XercD family
4HPP12_0438453578..454261 [-], 684210132603  [UniProt]  [KEGG]hypothetical protein
5virb6454334..455632 [-], 1299210132604  [UniProt]  [KEGG]VirB6 type IV secretion protein
6HPP12_0440455598..455876 [-], 279210132605  [UniProt]  [KEGG]hypothetical protein
7HPP12_0441455928..457328 [-], 1401210132606  [UniProt]  [KEGG]hypothetical protein
8HPP12_0442457332..457577 [-], 246210132607  [UniProt]  [KEGG]hypothetical protein
9HPP12_0443457791..459272 [-], 1482210132608  [UniProt]  [KEGG]hypothetical protein
10HPP12_0444459405..460469 [-], 1065210132609  [UniProt]  [KEGG]hypothetical protein
11HPP12_0445460312..460803 [-], 492210132610  [UniProt]  [KEGG]hypothetical protein
12HPP12_0446460810..461832 [-], 1023210132611  [UniProt]  [KEGG]hypothetical protein
13HPP12_0447462096..470522 [+], 8427210132612  [UniProt]  [KEGG]DNA methylase
14parA470785..471441 [+], 657210132613  [UniProt]  [KEGG]chromosome partitioning protein
15HPP12_0449471523..471807 [+], 285210132614  [UniProt]  [KEGG]hypothetical protein
16HPP12_0450471839..473017 [+], 1179210132615  [UniProt]  [KEGG]hypothetical protein
17virD2-1473042..474955 [-], 1914210132616  [UniProt]  [KEGG]relaxase
18HPP12_0452475253..475567 [+], 315210132617  [UniProt]  [KEGG]hypothetical proteinTA
19HPP12_0453475560..475841 [+], 282210132618  [UniProt]  [KEGG]hypothetical proteinTA
20virD4-1476105..477832 [-], 1728210132619  [UniProt]  [KEGG]VirD4 coupling protein
21HPP12_0455477879..478391 [-], 513210132620  [UniProt]  [KEGG]hypothetical protein
22HPP12_0456478392..478682 [-], 291210132621  [UniProt]  [KEGG]hypothetical protein
23HPP12_0457478679..479134 [-], 456210132622  [UniProt]  [KEGG]hypothetical protein
24virB11-1479131..480072 [-], 942210132623  [UniProt]  [KEGG]VirB11 type IV secretion ATPaseVF
25HPP12_0459480072..480371 [-], 300210132624  [UniProt]  [KEGG]hypothetical protein
26HPP12_0460480368..480631 [-], 264210132625  [UniProt]  [KEGG]hypothetical protein
27HPP12_0461480624..480917 [-], 294210132626  [UniProt]  [KEGG]hypothetical protein
28virB10-1480987..482252 [-], 1266210132627  [UniProt]  [KEGG]VirB10 type IV secretion protein
29virB9-1482252..483784 [-], 1533210132628  [UniProt]  [KEGG]VirB9 type IV secretion protein
30virB8-1483784..484953 [-], 1170210132629  [UniProt]  [KEGG]VirB8 type IV secretion protein
31virB7-1484957..485073 [-], 117210132630  [UniProt]  [KEGG]VirB7 type IV secretion protein
32virB3-1489522..489788 [-], 267210132631  [UniProt]  [KEGG]VirB3 type IV secretion protein
33virB2-1489789..490091 [-], 303210132632  [UniProt]  [KEGG]VirB2 type IV secretion protein
34HPP12_0470490088..490372 [-], 285210132633  [UniProt]  [KEGG]hypothetical protein
35HPP12_0471490433..491611 [-], 1179210132634  [UniProt]  [KEGG]hypothetical protein
36HPP12_0472491618..491911 [-], 294210132635  [UniProt]  [KEGG]hypothetical protein
37HPP12_0473491931..492710 [-], 780210132636  [UniProt]  [KEGG]hypothetical protein
38HPP12_0474494743..496638 [-], 1896210132637 hypothetical protein
39HPP12_0475496664..497431 [-], 768210132638 hypothetical protein
40HPP12_0476497441..497791 [-], 351210132639 integral membrane protein
41HPP12_0477497757..499244 [-], 1488210132640 hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins35Fasta
(1) Fischer W; Windhager L; Rohrer S; Zeiller M; Karnholz A; Hoffmann R; Zimmer R; Haas R (2010). Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101. [PudMed:20478826]