ICEberg
ICEberg ID397
NameICEHpyP12-2
FamilyUnclassified
OrganismHelicobacter pylori P12
Size (bp)30635
GC content [Genome] (%)33 [38]
Insertion sitetype II R-M system methyltransferase (HPP12_1319)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001217 (complete ICE sequence in this genome)
Replicon chromosome (1673813 bp, Project:32291) [NC_011498]
Genome coordinates1394776..1425410
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICEHpyP12-2 form CP001217
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1HPP12_13141389854..1390261 [-], 408210133475 type II R-M system restriction endonuclease
2HPP12_13151390306..1390851 [-], 546210133476 hypothetical protein
3HPP12_13161390860..1390988 [-], 129210133477 hypothetical protein
4HPP12_13171391041..1391214 [-], 174210133478 hypothetical protein
5HPP12_13181391189..1391668 [-], 480210133479 hypothetical protein
6HPP12_13201394833..1395621 [+], 789210133480  [UniProt]  [KEGG]hypothetical protein
7HPP12_13211395624..1395854 [+], 231210133481  [UniProt]  [KEGG]hypothetical protein
8HPP12_13221395847..1396335 [+], 489210133482  [UniProt]  [KEGG]hypothetical protein
9virB2-21396323..1396607 [+], 285210133483  [UniProt]  [KEGG]VirB2 type IV secretion protein
10virB3-21396619..1396882 [+], 264210133484  [UniProt]  [KEGG]VirB3 type IV secretion protein
11HPP12_13251396894..1397130 [+], 237210133485  [UniProt]  [KEGG]hypothetical protein
12virB4-21397130..1399706 [+], 2577210133486  [UniProt]  [KEGG]VirB4 type IV secretion ATPase
13virB7-21399703..1399843 [+], 141210133487  [UniProt]  [KEGG]VirB7 type IV secretion protein
14virB8-21399836..1400972 [+], 1137210133488  [UniProt]  [KEGG]VirB8 type IV secretion protein
15virB9-21400969..1402624 [+], 1656210133489  [UniProt]  [KEGG]VirB9 type IV secretion proteinVF
16virB10-21402591..1403829 [+], 1239210133490  [UniProt]  [KEGG]VirB10 type IV secretion proteinVF
17HPP12_13311403813..1405597 [+], 1785210133491  [UniProt]  [KEGG]hypothetical protein
18HPP12_13321405501..1406055 [+], 555210133492  [UniProt]  [KEGG]hypothetical protein
19HPP12_13331406068..1407030 [+], 963210133493  [UniProt]  [KEGG]hypothetical protein
20HPP12_13341407047..1407322 [+], 276210133494  [UniProt]  [KEGG]hypothetical protein
21virB11-31407327..1408271 [+], 945210133495  [UniProt]  [KEGG]VirB11 type IV secretion ATPaseVF
22HPP12_13361408268..1408786 [+], 519210133496  [UniProt]  [KEGG]hypothetical protein
23virD4-21408783..1411026 [+], 2244210133497  [UniProt]  [KEGG]VirD4 coupling protein
24HPP12_13391413163..1413633 [+], 471210133498  [UniProt]  [KEGG]hypothetical protein
25HPP12_13401413603..1414406 [+], 804210133499  [UniProt]  [KEGG]hypothetical protein
26HPP12_13411414480..1415145 [-], 666210133500  [UniProt]  [KEGG]hypothetical protein
27HPP12_13421415123..1415401 [-], 279210133501  [UniProt]  [KEGG]hypothetical protein
28HPP12_13431415334..1415765 [-], 432210133502  [UniProt]  [KEGG]hypothetical protein
29HPP12_13441415750..1416160 [+], 411210133503  [UniProt]  [KEGG]hypothetical protein
30HPP12_13451416165..1416794 [-], 630210133504  [UniProt]  [KEGG]hypothetical protein
31HPP12_13461416897..1417178 [-], 282210133505  [UniProt]  [KEGG]hypothetical protein
32HPP12_13471417399..1417788 [+], 390210133506  [UniProt]  [KEGG]hypothetical protein
33HPP12_13481417796..1418086 [+], 291210133507  [UniProt]  [KEGG]hypothetical protein
34HPP12_13491418215..1418466 [+], 252210133508  [UniProt]  [KEGG]hypothetical protein
35HPP12_13501418394..1419248 [+], 855210133509  [UniProt]  [KEGG]hypothetical protein
36HPP12_13521421131..1421259 [+], 129210133510  [UniProt]  [KEGG]hypothetical protein
37virD2-21421785..1423818 [-], 2034210133511  [UniProt]  [KEGG]relaxase
38nadC1425436..1426257 [-], 822210133512 nicotinate-nucleotide pyrophosphorylase
39nadA1426257..1427267 [-], 1011210133513 quinolinate synthetase A
40psd1427257..1428060 [-], 804210133514 phosphatidylserine decarboxylase proenzyme
41HPP12_13571428054..1428560 [-], 507210133515 hypothetical protein
42HPP12_13581428573..1429124 [-], 552210133516 hypothetical protein
43ubiA1429060..1429944 [-], 885210133517 4-hydroxybenzoate octaprenyltransferase
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins32Fasta
(1) Fischer W; Windhager L; Rohrer S; Zeiller M; Karnholz A; Hoffmann R; Zimmer R; Haas R (2010). Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101. [PudMed:20478826]