ICEberg
ICEberg ID40
NameICEPmiUSA1
FamilySXT/R391
OrganismProteus mirabilis HI4320
Size (bp)80632
GC content [Genome] (%)47 [37]
Insertion siteprfC (PMI2422)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM942759 (complete ICE sequence in this genome)
Replicon chromosome (4063606 bp, Project:12624) [NC_010554]
Genome coordinates2649499..2730130
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICEPmiUSA1 form AM942759
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1PMI24172644690..2644863 [-], 174194683750 hypothetical protein
2PMI24182645217..2646518 [-], 1302194683751 putative Na+ dependent nucleoside transporter
3PMI24192646806..2647588 [-], 783194683752 putative TatD-related deoxyribonuclease
4PMI24202647585..2648646 [-], 1062194683753 patatin-like phospholipase
5PMI24212648743..2649090 [-], 348194683754 putative phospholipid-binding protein
6prfC2649499..2651088 [-], 1590194683755  [UniProt] peptide chain release factor 3
7PMI24232651345..2651992 [-], 648194683756  [UniProt] putative phage repressor
8PMI24242652110..2652361 [+], 252194683757  [UniProt] phage regulatory protein
9PMI24252652417..2653286 [+], 870194683758  [UniProt] putative phage protein
10PMI24262653327..2653935 [+], 609194683759  [UniProt] putative phage protein
11PMI24272653922..2654470 [+], 549194683760  [UniProt] putative phage transglycosylase
12PMI24282654467..2654766 [+], 300194683761  [UniProt] putative phage protein
13PMI24292654763..2655296 [+], 534194683762  [UniProt] putative phage regulatory protein
14PMI24302655354..2655785 [+], 432194683763  [UniProt] putative phage membrane protein
15PMI24312655818..2659387 [-], 3570194683764  [UniProt] putative pilus assembly protein
16PMI24322659391..2660779 [-], 1389194683765  [UniProt] putative pilus assembly protein
17PMI24332660782..2661726 [-], 945194683766  [UniProt] putative pilus assembly
18PMI24342662014..2663906 [-], 1893194683767  [UniProt] putative plasmid-related helicase
19PMI24352663903..2665867 [-], 1965194683768  [UniProt] putative plasmid-related protein
20PMI24362666041..2666241 [-], 201194683769  [UniProt] putative plasmid-related protein
21PMI24372666375..2667082 [-], 708194683770  [UniProt] putative plasmid-related protein
22PMI24382667172..2668245 [-], 1074194683771  [UniProt] putative plasmid-related protein
23PMI24392668337..2668678 [-], 342194683772  [UniProt] putative plasmid-related protein
24PMI24402668678..2669175 [-], 498194683773  [UniProt] putative plasmid-related DNA repair proteinVF
25PMI24412669258..2670913 [-], 1656194683774  [UniProt] putative plasmid-related protein
26PMI24422670983..2671423 [-], 441194683775  [UniProt] putative plasmid-related protein
27PMI24432671485..2672438 [-], 954194683776  [UniProt] putative plasmid-related protein
28PMI24442672537..2673304 [-], 768194683777  [UniProt] putative plasmid-related protein
29PMI24452673304..2674263 [-], 960194683778  [UniProt] putative plasmid-related ATPase
30PMI24462674473..2675489 [-], 1017194683779  [UniProt] putative plasmid-related protein
31PMI24472675550..2675693 [-], 144194683780  [UniProt] putative plasmid-related protein
32PMI24482675777..2676595 [-], 819194683781  [UniProt] putative phage recombination protein
33PMI24492676675..2677094 [-], 420194683782  [UniProt] putative plasmid-related single-stranded DNA-binding proteinVF
34PMI24502677110..2677436 [-], 327194683783  [UniProt] putative plasmid-related protein
35PMI24512677804..2678406 [+], 603194683784  [UniProt] putative plasmid-related protein
36PMI24522678515..2679189 [+], 675194683785  [UniProt] endonuclease precursor
37PMI24532679254..2679772 [-], 519194683786  [UniProt] putative plasmid-related regulatory protein
38PMI24542679792..2682065 [-], 2274194683787  [UniProt] putative plasmid-related membrane protein
39PMI24552682075..2682323 [-], 249194683788  [UniProt] putative plasmid-related glycin-rich membrane protein
40PMI24562682565..2686257 [-], 3693194683789  [UniProt] putative mating pair stabilization protein
41PMI24572686260..2687288 [-], 1029194683790  [UniProt] putative plasmid pilus assembly
42PMI24582687272..2688399 [-], 1128194683791  [UniProt] putative plasmid pilus assembly protein
43PMI24592688407..2688919 [-], 513194683792  [UniProt] putative plasmid conjugation signal peptidase
44PMI24602688903..2689250 [-], 348194683793  [UniProt] putative plasmid-related protein
45PMI24612689243..2691642 [-], 2400194683794  [UniProt] putative plasmid pilus assembly protein
46PMI24622691642..2692334 [-], 693194683795  [UniProt] putative plasmid-related disulfide bond isomerase
47PMI24632692466..2693404 [-], 939194683796  [UniProt] putative plasmid-related proteinTA
48PMI24642693397..2694230 [-], 834194683797  [UniProt] putative plasmid-related proteinTA
49PMI24652694408..2694794 [-], 387194683798  [UniProt] putative plasmid-related protein
50PMI24662694791..2695441 [-], 651194683799  [UniProt] putative plasmid-related protein
51PMI24672695438..2696727 [-], 1290194683800  [UniProt] putative plasmid pilus assembly protein
52PMI24682696730..2697629 [-], 900194683801  [UniProt] putative plasmid-related protein
53PMI24692697610..2698236 [-], 627194683802  [UniProt] putative plasmid pilus assembly protein
54PMI24702698233..2698514 [-], 282194683803  [UniProt] putative plasmid pilus assembly protein
55PMI24712698550..2698789 [+], 240194683804  [UniProt] putative plasmid-related protein
56PMI24722698803..2699390 [+], 588194683805  [UniProt] putative plasmid-related protein
57PMI24732699417..2700061 [-], 645194683806  [UniProt] putative plasmid-related protein
58PMI24742700039..2700599 [-], 561194683807  [UniProt] putative plasmid-related protein
59PMI24752700609..2702429 [-], 1821194683808  [UniProt] putative plasmid conjugative transfer protein
60PMI24762702478..2704628 [-], 2151194683809  [UniProt] putative plasmid conjugative relaxase
61PMI24772704877..2707012 [-], 2136194683810  [UniProt] putative DNA helicase
62PMI24782707018..2713440 [-], 6423194683811  [UniProt] putative DNA helicase
63PMI24792713633..2718603 [-], 4971194683812  [UniProt] putative plasmid-related protein
64PMI24802718606..2721569 [-], 2964194683813  [UniProt] putative plasmid ATP-dependent helicase
65PMI24812721596..2722519 [-], 924194683814  [UniProt] putative plasmid-related protein
66PMI24822722837..2723136 [-], 300194683815  [UniProt] putative plasmid-related protein
67PMI24832723224..2724129 [-], 906194683816  [UniProt] putative plasmid-related exonuclease
68umuD2724786..2725235 [+], 450194683817  [UniProt] DNA repair protein
69umuC2725243..2726511 [+], 1269194683818  [UniProt] DNA repair protein
70PMI2485A2726550..2726720 [+], 171194683819  [UniProt] putative plasmid-related protein
71PMI24862726717..2726878 [+], 162194683820  [UniProt] conjugative transposon protein
72PMI24872727158..2727325 [+], 168194683821  [UniProt] putative conjugative transposon protein
73PMI24882727430..2728404 [+], 975194683822  [UniProt] putative plasmid-related protein
74PMI24892728407..2728676 [+], 270194683823  [UniProt] putative plasmid-related protein
75PMI24902728678..2729919 [+], 1242194683824  [UniProt] integrase
76PMI24912729936..2730130 [-], 195194683825  [UniProt] putative DNA-binding protein
77PMI2491A2730733..2730804 [-], 72pseudogene N-terminus of peptide chain release factor 3 (fragment)
78PMI24922731174..2731710 [+], 537194683826 conserved hypothetical protein
79PMI24932731700..2732620 [+], 921194683827 conserved hypothetical protein
80rimI2732932..2733378 [-], 447194683828 ribosomal-protein-alanine acetyltransferase
81holD2733347..2733757 [-], 411194683829 DNA polymerase III, psi subunit
82rsmC2733887..2734900 [+], 1014194683830 ribosomal RNA small subunit methyltransferase C
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins71Fasta
(1) Flannery EL; Antczak SM; Mobley HL (2011). Self-Transmissibility of the Integrative and Conjugative Element ICEPm1 between Clinical Isolates Requires a Functional Integrase, Relaxase, and Type IV Secretion System. J Bacteriol. 193(16):4104-12. [PudMed:21665966] experimental
(2) Wozniak RA; Fouts DE; Spagnoletti M; Colombo MM; Ceccarelli D; Garriss G; Dery C; Burrus V; Waldor MK (2009). Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 5(12):e1000786. [PudMed:20041216] in_silico
(3) Flannery EL; Mody L; Mobley HL (2009). Identification of a modular pathogenicity island that is widespread among urease-producing uropathogens and shares features with a diverse group of mobile elements. Infect Immun. 77(11):4887-94. [PudMed:19687197] experimental
 
experimental experimental literature
in_silico in silico analysis literature