ICEberg ID401
OrganismClostridium difficile 630
Size (bp)~44 K
GC content [Genome] (%)33 [29]
Insertion siteCD630_18440
Species that ICE can be transferred to-
Nucleotide SequenceAM180355 (ICE sequence without defined boundaries in this genome)
Replicon chromosome (4290252 bp, Project:78) [NC_009089]
Genome coordinates2137789..2181291
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of CTn5 form AM180355
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1CD630_184202134424..2135170 [+], 747115250888 conserved hypothetical protein, DUF218 family
2CD630_184302135119..2135427 [-], 309115250889 conserved hypothetical protein
3CD630_184402136229..2185930 [+], 49702pseudogene Fragment of conserved hypothetical protein
4CD630_184412137462..2137770 [+], 309pseudogene Fragment of putative methyltransferase (N-terminal region)
5CD630_184502137789..2138070 [+], 282115250891  [UniProt]  [KEGG]putative membrane protein Tn1549-like,CTn5-Orf1
6CD630_184602138111..2138629 [+], 519115250892  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf2
7CD630_184702138730..2139740 [+], 1011115250893  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf3
8CD630_184802139742..2140227 [+], 486115250894  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf4
9CD630_184902140266..2142005 [+], 1740115250895  [UniProt]  [KEGG]putative conjugative transfer protein Tn1549-like, CTn5-Orf5
10CD630_185002142169..2143035 [+], 867115250896  [UniProt]  [KEGG]Transcriptional regulator, AraC family; Tn1549-like, CTn5-Orf6
11CD630_185102143244..2143555 [+], 312115250897  [UniProt]  [KEGG]putative single-strand DNA-binding protein Tn1549-like, CTn5-Orf7
12CD630_185202143559..2143774 [+], 216115250898  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf8
13CD630_185302143794..2144657 [+], 864115250899  [UniProt]  [KEGG]putative membrane protein Tn1549-like,CTn5-Orf9
14CD630_185402144675..2144935 [+], 261115250900  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf10
15CD630_185502144939..2145328 [+], 390115250901  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf11
16CD630_185602145240..2147669 [+], 2430115250902  [UniProt]  [KEGG]putative hydrolase Tn1549-like, CTn5-Orf12
17CD630_185702147674..2149836 [+], 2163115250903  [UniProt]  [KEGG]putative cell wall hydrolase Tn1549-like,CTn5-Orf13VF
18CD630_185712149848..2150081 [+], 234115250904  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf14
19CD630_185802150071..2151642 [+], 1572115250905  [UniProt]  [KEGG]putative cell surface protein Tn1549-like,CTn5-Orf15
20CD630_185902151738..2153444 [+], 1707115250906  [UniProt]  [KEGG]DNA topoisomerase protein, type IA,Tn1549-like, CTn5-Orf16
21CD630_185912153528..2153713 [+], 186115250907  [UniProt]  [KEGG]Transcriptional regulator, AbrB family; Tn1549-like, CTn5-Orf17
22CD630_186002153747..2154793 [+], 1047115250908  [UniProt]  [KEGG]putative conjugative transposon protein DUF1016 family, Tn1549-like, CTn5-Orf18
23CD630_186102154904..2155710 [+], 807115250909  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf19
24CD630_186202155823..2164804 [+], 8982328887631  [UniProt]  [KEGG]putative DNA/RNA helicase Tn1549-like,CTn5-Orf21
25CD630_186302164847..2165506 [+], 660328887632  [UniProt]  [KEGG]putative single-strand DNA-binding protein Tn1549-like, CTn5-Orf22
26CD630_186402165646..2165876 [+], 231115250912  [UniProt]  [KEGG]Transcriptional regulator, HTH-type Tn1549-like, CTn5-Orf23
27CD630_186502166079..2167701 [+], 1623115250913  [UniProt]  [KEGG]putative DNA recombination protein Tn1549-like,CTn5-Orf24VF
28CD630_186602167698..2168765 [+], 1068115250914  [UniProt]  [KEGG]putative conjugative transposon protein tn1549-like, CTn5-Orf25
29CD630_186702168793..2169254 [+], 462115250915  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf26
30CD630_186802169244..2170050 [+], 807115250916  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf27
31CD630_186902170086..2171417 [-], 1332115250917  [UniProt]  [KEGG]putative endonuclease relaxase Tn1549-like,CTn5-Orf28
32CD630_187002171423..2171773 [-], 351115250918  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf29
33CD630_187102172097..2173254 [+], 1158115250919  [UniProt]  [KEGG]putative oxidoreductase Tn1549-like,CTn5-Orf30
34CD630_187112173276..2173428 [+], 153115250920  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf31
35CD630_187202173421..2174311 [+], 891328887633  [UniProt]  [KEGG]putative iron-sulfur binding protein Tn1549-like, CTn5-Orf32
36vexP12174330..2175607 [+], 1278115250922  [UniProt]  [KEGG]ABC-type transport system, permease Tn1549-like, CTn5-Orf33
37vexP22175617..2176273 [+], 657115250923  [UniProt]  [KEGG]ABC-type transport system, ATP-binding protein Tn1549-like, CTn5-Orf34VF
38vexP32176273..2177649 [+], 1377115250924  [UniProt]  [KEGG]ABC-type transport system, permease Tn1549-like, CTn5-Orf35
39vncR2177747..2178400 [+], 654115250925  [UniProt]  [KEGG]Two-component response regulator; Tn1549-like,CTn5-Orf36
40vncS2178397..2179716 [+], 1320115250926  [UniProt]  [KEGG]Two-component sensor histidine kinase; Tn154c-like, CTn5-Orf37
41CD630_187802180240..2180650 [+], 411115250927  [UniProt]  [KEGG]putative sigma factor Tn1549-like, CTn5-Orf38
42CD630_187822181139..2181291 [+], 153115250928  [UniProt]  [KEGG]putative conjugative transposon protein Tn1549-like, CTn5-Orf39
43CD630_184402136229..2185930 [+], 49702pseudogene Fragment of conserved hypothetical protein
44CD630_187812181392..2183038 [+], 1647pseudogene Fragment of conserved hypothetical protein (N-terminal region)
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
(1) Sebaihia M; Wren BW; Mullany P; Fairweather NF; Minton N; Stabler R; Thomson NR; Roberts AP; Cerdeno-Tarraga AM; Wang H; Holden MT; Wright A; Churcher C; Quail MA; Baker S; Bason N; Brooks K; Chillingworth T; Cronin A; Davis P; Dowd L; Fraser A; Feltwell T; Hance Z; Holroyd S; Jagels K; Moule S; Mungall K; Price C; Rabbinowitsch E; Sharp S; Simmonds M; Stevens K; Unwin L; Whithead S; Dupuy B; Dougan G; Barrell B; Parkhill J (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PudMed:16804543]