ICEberg
ICEberg ID405
NameYAPI(ye)
FamilyICEYe1
OrganismYersinia enterocolitica subsp. enterocolitica 8081
Size (bp)66144
GC content [Genome] (%)48 [47]
Insertion sitetRNA-Phe(YE3450)
Functionencodes a possible hemolysin (YE3454), a toxin/antitoxin system (YE3480 and YE3481), and an arsenic-resistance operon (YE3472–YE3475)
Species that ICE can be transferred to-
Nucleotide SequenceAM286415 (complete ICE sequence in this genome)
Replicon chromosome (4615899 bp, Project:190) [NC_008800]
Genome coordinates3761945..3828088
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of YAPI(ye) form AM286415
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1mltC3757024..3758112 [+], 1089122090600 membrane-bound lytic murein transglycosylase C
2YE34463758283..3759032 [+], 750122090601 putative membrane protein
3speC3759101..3761263 [-], 2163122090602 ornithine decarboxylase
4YE34503762254..3763237 [-], 984122090603  [UniProt]  [KEGG]phage integrase
5YE34513763267..3764463 [-], 1197122090604  [UniProt]  [KEGG]conserved hypothetical protein
6YE34523764827..3765171 [+], 345122090605  [UniProt]  [KEGG]hypothetical protein
7YE34533765220..3765561 [-], 342122090606  [UniProt]  [KEGG]hypothetical protein
8YE34543765558..3767960 [-], 2403122090607  [UniProt]  [KEGG]putative hemolysin
9YE34553768387..3768686 [+], 300pseudogene transposase for IS3-like insertion sequence (pseudogene)
10YE34563768683..3768922 [+], 240pseudogene transposase for IS3-like insertion sequence (pseudogene)
11YE34573769251..3769835 [+], 585122090608  [UniProt]  [KEGG]putative membrane protein
12YE34583769900..3770802 [-], 903122090609  [UniProt]  [KEGG]conserved hypothetical protein
13YE34593770903..3771190 [-], 288122090610  [UniProt]  [KEGG]hypothetical proteinVF
14YE34603771187..3772188 [-], 1002122090611  [UniProt]  [KEGG]hypothetical protein
15YE34613772593..3773480 [-], 888122090612  [UniProt]  [KEGG]putative phage integrase
16YE34623775095..3776192 [+], 1098122090613  [UniProt]  [KEGG]hypothetical protein
17YE34633776189..3777172 [+], 984122090614  [UniProt]  [KEGG]hypothetical protein
18YE34643777495..3777758 [+], 264122090615  [UniProt]  [KEGG]hypothetical protein
19YE34653777818..3779338 [-], 1521122090616  [UniProt]  [KEGG]putative membrane protein
20YE34663779338..3780744 [-], 1407122090617  [UniProt]  [KEGG]putative exported protein
21YE34673780765..3781718 [-], 954122090618  [UniProt]  [KEGG]putative exported protein
22YE34683781715..3782068 [-], 354122090619  [UniProt]  [KEGG]hypothetical protein
23arsR23783946..3784299 [+], 354122090620  [UniProt]  [KEGG]arsenical resistance operon repressor
24arsD3784346..3784708 [+], 363122090621  [UniProt]  [KEGG]arsenical resistance operon trans-acting repressor
25arsA23784726..3786477 [+], 1752122090622  [UniProt]  [KEGG]arsenical pump-driving ATPase
26arsB23786526..3787815 [+], 1290122090623  [UniProt]  [KEGG]arsenical pump membrane protein
27arsC23787828..3788253 [+], 426122090624  [UniProt]  [KEGG]arsenate reductase
28tpn13303788299..3789492 [-], 1194122090625  [UniProt]  [KEGG]transposase for IS1330VF
29arsH3789694..3790404 [-], 711122090626  [UniProt]  [KEGG]putative arsenic resistance protein
30YE34783790536..3790829 [-], 294122090627  [UniProt]  [KEGG]conserved hypothetical protein
31YE34793790936..3792069 [+], 1134122090628  [UniProt]  [KEGG]putative membrane transport protein
32ccdB3792208..3792522 [-], 315122090629  [UniProt]  [KEGG]cytotoxic proteinTA
33ccdA3792525..3792761 [-], 237122090630  [UniProt]  [KEGG]gyrase inhibitor antitoxinTA
34YE34823793238..3795880 [-], 2643122090631  [UniProt]  [KEGG]Conserved hypothetical protein
35YE34833796042..3796446 [-], 405122090632  [UniProt]  [KEGG]putative lipoprotein
36YE34843796456..3797913 [-], 1458122090633  [UniProt]  [KEGG]conserved hypothetical protein
37YE34853797961..3798827 [-], 867122090634  [UniProt]  [KEGG]putative exported protein
38YE34863798824..3799477 [-], 654122090635  [UniProt]  [KEGG]putative membrane protein
39YE34873799474..3799848 [-], 375122090636  [UniProt]  [KEGG]putative inner membrane protein
40YE34883799858..3800208 [-], 351122090637  [UniProt]  [KEGG]putative exported protein
41YE34893800224..3800472 [-], 249122090638  [UniProt]  [KEGG]putative membrane protein
42YE34903800469..3800777 [-], 309122090639  [UniProt]  [KEGG]putative exported protein
43YE34923801682..3802434 [-], 753122090640  [UniProt]  [KEGG]putative inner membrane protein
44YE34933802434..3804554 [-], 2121122090641  [UniProt]  [KEGG]TraG-family protein
45YE34943804740..3805234 [-], 495122090642  [UniProt]  [KEGG]conserved hypothetical protein
46YE3494A3805258..3805806 [-], 549122090643  [UniProt]  [KEGG]conserved hypothetical protein
47YE34953805875..3806642 [-], 768122090644  [UniProt]  [KEGG]putative membrane protein
48YE3495A3806785..3807132 [-], 348122090645  [UniProt]  [KEGG]hypothetical protein
49YE34963807111..3807365 [-], 255122090646  [UniProt]  [KEGG]hypothetical protein
50YE3496A3807520..3807876 [+], 357122090647  [UniProt]  [KEGG]putative DNA-binding protein
51YE34973808031..3808951 [-], 921122090648  [UniProt]  [KEGG]putative transposase
52YE34983809045..3810322 [-], 1278122090649  [UniProt]  [KEGG]putative type IV pilus proteinVF
53YE34993810326..3810994 [-], 669122090650  [UniProt]  [KEGG]type IV prepilin peptidaseVF
54YE35003810991..3811578 [-], 588122090651  [UniProt]  [KEGG]putative type IV prepilinVF
55YE35013811593..3812702 [-], 1110122090652  [UniProt]  [KEGG]type IV pilus integral membrane proteinVF
56YE35023812695..3814248 [-], 1554122090653  [UniProt]  [KEGG]putative type IV pilus proteinVF
57YE3502A3814257..3814736 [-], 480122090654  [UniProt]  [KEGG]putative type IV pilus proteinVF
58YE35033814723..3816030 [-], 1308122090655  [UniProt]  [KEGG]putative type IV pilus proteinVF
59YE35043816033..3817721 [-], 1689122090656  [UniProt]  [KEGG]putative type IV pilus operon lipoproteinVF
60YE35053817733..3818170 [-], 438122090657  [UniProt]  [KEGG]putative type IV pilus operon exported poproteinVF
61YE35063818172..3819146 [-], 975122090658  [UniProt]  [KEGG]putative type IV pilus operon lipoproteinVF
62YE35073819341..3819772 [-], 432122090659  [UniProt]  [KEGG]conserved hypothetical protein
63YE35083819884..3820201 [-], 318122090660  [UniProt]  [KEGG]hypothetical protein
64YE35093820501..3821043 [-], 543122090661  [UniProt]  [KEGG]hypothetical protein
65YE35103821333..3822091 [-], 759122090662  [UniProt]  [KEGG]conserved hypothetical protein
66YE35113822260..3823462 [-], 1203122090663  [UniProt]  [KEGG]conserved hypothetical protein
67YE35123823568..3824137 [-], 570122090664  [UniProt]  [KEGG]conserved hypothetical protein
68YE35133824134..3825720 [-], 1587122090665  [UniProt]  [KEGG]putative ATP/GTP binding protein
69dnaB23825720..3827087 [-], 1368122090666  [UniProt]  [KEGG]putative DNA helicase
70YE35153827080..3827961 [-], 882122090667  [UniProt]  [KEGG]conserved hypothetical protein
71YE35163828311..3829272 [-], 962pseudogene putative integrase (pseudogene)
72YE35183829378..3829686 [-], 309122090668 putative exported protein
73YE35193829958..3830125 [+], 168122090669 hypothetical protein
74YE35203830294..3831526 [-], 1233122090670 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins65Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(2) Thomson NR; Howard S; Wren BW; Holden MT; Crossman L; Challis GL; Churcher C; Mungall K; Brooks K; Chillingworth T; Feltwell T; Abdellah Z; Hauser H; Jagels K; Maddison M; Moule S; Sanders M; Whitehead S; Quail MA; Dougan G; Parkhill J; Prentice MB (2006). The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet. 2(12):e206. [PudMed:17173484]
 
in_silico in silico analysis literature