ICEberg
ICEberg ID406
NameYAPI
FamilyICEYe1
OrganismYersinia pseudotuberculosis 32777
Size (bp)98112
GC content [Genome] (%)47.8
Insertion sitetRNA-Phe
FunctionPathogenicity
Species that ICE can be transferred to-
Nucleotide SequenceAJ627388 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1402..99513
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of YAPI form AJ627388
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1YPO03392..973 [+], 97249658847 putative viral enhancing factor
2YP03401036..1134 [-], 9949658848 transposase
3api11534..2415 [+], 88249658849  [UniProt] putative ATPase
4api22408..3769 [+], 136249658850  [UniProt] putative DNA binding protein with DNA-dependent ATPase activity
5api33762..5444 [+], 168349658851  [UniProt] conserved hypothetical protein
6api45441..6022 [+], 58249658852  [UniProt] hypothetical protein
7api56488..7687 [+], 120049658853  [UniProt] hypothetical protein
8api67847..8605 [+], 75949658854  [UniProt] hypothetical protein
9api78906..9448 [+], 54349658855  [UniProt] hypothetical protein
10api89651..10082 [+], 43249658856  [UniProt] hypothetical protein
11api910253..10486 [+], 23449658857  [UniProt] putative prevent-host-death family proteinTA
12api1010483..10869 [+], 38749658858  [UniProt] hypothetical proteinTA
13pilL11007..12077 [+], 107149658859  [UniProt] putative membrane anchored proteinVF
14pilM12079..12516 [+], 43849658860  [UniProt] putative exported proteinVF
15pilN12530..14122 [+], 159349658861  [UniProt] putative lipoproteinVF
16pilO14125..15462 [+], 133849658862  [UniProt] putative fimbrial proteinVF
17pilP15449..15943 [+], 49549658863  [UniProt] putative fimbrial proteinVF
18pilQ15953..17506 [+], 155449658864  [UniProt] putative ATP binding proteinVF
19pilR17499..18608 [+], 111049658865  [UniProt] putative integral inner membrane proteinVF
20pilS18623..19210 [+], 58849658866  [UniProt] putative major pilin subunitVF
21pilU19207..19875 [+], 66949658867  [UniProt] putative cysteine-type peptidaseVF
22pilV19879..21156 [+], 127849658868  [UniProt] secondary type IV prepilinVF
23pilW21211..22170 [+], 96049658869  [UniProt] putative transposase
24api2222485..22841 [-], 35749658870  [UniProt] putative DNA binding protein
25api2323249..23581 [+], 33349658871  [UniProt] hypothetical protein
26api2423673..24491 [+], 81949658872  [UniProt] conserved hypothetical protein
27api2524470..25108 [+], 63949658873  [UniProt] conserved hypothetical protein
28api2625105..25626 [+], 52249658874  [UniProt] hypothetical protein
29api2725685..27805 [+], 212149658875  [UniProt] hypothetical protein
30api2827805..28557 [+], 75349658876  [UniProt] putative membrane protein
31api2928708..29400 [-], 69349658877  [UniProt] hypothetical protein
32api3029461..29931 [-], 47149658878  [UniProt] hypothetical protein
33api3130315..30623 [+], 30949658879  [UniProt] hypothetical protein
34api3230623..30868 [+], 24649658880  [UniProt] putative transmembrane protein
35api3330884..31234 [+], 35149658881  [UniProt] putative transmembrane protein
36api3431244..31618 [+], 37549658882  [UniProt] putative transmembrane protein
37api3531615..32268 [+], 65449658883  [UniProt] putative exported protein
38api3632298..33131 [+], 83449658884  [UniProt] hypothetical protein
39api3733128..34645 [+], 151849658885  [UniProt] putative exported protein
40api3834655..35059 [+], 40549658886  [UniProt] putative lipoprotein
41api3935059..37905 [+], 284749658887  [UniProt] hypothetical protein
42api4038208..39923 [+], 171649658888  [UniProt] hypothetical protein
43api4140195..41403 [-], 120949658889  [UniProt] is285 transposase
44api4241489..42418 [+], 93049658890  [UniProt] DNA binding protein
45api4342821..43702 [+], 88249658891  [UniProt] hypothetical protein
46api4444103..45248 [+], 114649658892  [UniProt] hypothetical protein
47api4545483..46220 [+], 73849658893  [UniProt] hypothetical protein
48api4646406..47275 [+], 87049658894  [UniProt] putative transposaseVF
49api4747437..48117 [-], 68149658895  [UniProt] hypothetical protein
50api4848110..48829 [-], 72049658896  [UniProt] hypothetical protein
51api4949215..50921 [+], 170749658897  [UniProt] putative HsdM-like N-methyl transferase
52api5050911..52260 [+], 135049658898  [UniProt] putative HsdS-like DNA methylase
53api5152253..53440 [+], 118849658899  [UniProt] conserved hypothetical protein
54api5253441..56572 [+], 313249658900  [UniProt] hsdr-like Type I restriction enzyme
55api5356749..57153 [+], 40549658901  [UniProt] hypothetical protein
56api5457150..58103 [+], 95449658902  [UniProt] conserved hypothetical protein
57api5558124..59530 [+], 140749658903  [UniProt] putative exported protein
58api5659530..61053 [+], 152449658904  [UniProt] putative membrane protein
59api5761085..61381 [-], 29749658905  [UniProt] hypothetical protein
60api5861449..62708 [-], 126049658906  [UniProt] hypothetical protein
61api5963480..63677 [-], 19849658907  [UniProt] hypothetical protein
62api6063846..64013 [+], 16849658908  [UniProt] putative prophage protein
63api6164053..64295 [-], 243pseudogene api61 protein
64api6264567..64758 [+], 19249658909  [UniProt] hypothetical protein
65api6364807..65058 [+], 25249658910  [UniProt] fragment of conserved hypothetical proteinVF
66api6465389..66849 [+], 146149658911  [UniProt] putative tRNA synthetase
67api6566836..67300 [+], 46549658912  [UniProt] hypothetical protein
68api6667291..67764 [+], 47449658913  [UniProt] n-acetyltransferase
69api6767813..69441 [+], 162949658914  [UniProt] putative AMP-binding enzyme
70api6869438..70097 [+], 66049658915  [UniProt] putative acyl carrier-like protein
71api6970097..71143 [+], 104749658916  [UniProt] putative oxidoreductase
72api7071140..71934 [+], 79549658917  [UniProt] hypothetical protein
73api7172064..72960 [+], 89749658918  [UniProt] putative esterase
74api7272968..73366 [+], 39949658919  [UniProt] putative rhodanese-like protein
75api7373462..73827 [+], 36649658920  [UniProt] hypothetical protein
76api7473855..75186 [+], 133249658921  [UniProt] putative oxidoreductase
77api7575212..76543 [+], 133249658922  [UniProt] putative diaminobutyrate transaminase
78api7676540..77772 [+], 123349658923  [UniProt] putative FAD-dependent monooxygenase
79api7777984..78943 [+], 96049658924  [UniProt] integral membrane protein
80api7879095..80012 [+], 91849658925  [UniProt] hypothetical protein
81api7980164..81198 [+], 103549658926  [UniProt] putative transposase
82api8081503..81766 [+], 26449658927  [UniProt] putative transposaseVF
83api8182909..83943 [-], 103549658928  [UniProt] putative transposase
84api8284116..84424 [+], 30949658929  [UniProt] putative integrase
85api8384438..85460 [+], 102349658930  [UniProt]  [KEGG]transposaseVF
86api8485460..86239 [+], 78049658931  [UniProt]  [KEGG]putative transposaseVF
87api8586255..86965 [+], 71149658932  [UniProt] putative integrase
88api8687199..87249 [-], 5149658933  [UniProt] putative transposase
89api8787310..87930 [-], 62149658934  [UniProt] hypothetical protein
90api8888294..88767 [-], 47449658935  [UniProt] hypothetical protein
91api8988767..93038 [-], 427249658936  [UniProt] putative membrane-bound sugar-binding protein
92api9093069..93500 [-], 43249658937  [UniProt] hypothetical protein
93api9194168..95139 [+], 97249658938  [UniProt] hypothetical protein
94api9295249..96154 [+], 90649658939  [UniProt]  [PDB] hypothetical protein
95api9396168..96815 [-], 64849658940  [UniProt] putative PilK-like exported protein
96api9497007..98203 [+], 119749658941  [UniProt] hypothetical protein
97api9598233..99213 [+], 98149658942  [UniProt] putative phage integrase
98YPO034199685..100260 [-], 57649658943 putative transcription regulator
99YP0342100680..102695 [+], 201649658944 putative oxidoreductase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins94Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(2) Collyn F; Billault A; Mullet C; Simonet M; Marceau M (2004). YAPI, a new Yersinia pseudotuberculosis pathogenicity island. Infect Immun. 72(8):4784-90. [PudMed:15271940] experimental
(3) Collyn F; Lety MA; Nair S; Escuyer V; Ben Younes A; Simonet M; Marceau M (2002). Yersinia pseudotuberculosis harbors a type IV pilus gene cluster that contributes to pathogenicity. Infect Immun. 70(11):6196-205. [PudMed:12379698] experimental
 
experimental experimental literature
in_silico in silico analysis literature