ICEberg
ICEberg ID407
NameYAPI(IP31758)
FamilyICEYe1
OrganismYersinia pseudotuberculosis IP 31758
Size (bp)64694
GC content [Genome] (%)48 [47]
Insertion sitetRNA-Phe
FunctionPathogenicity
Species that ICE can be transferred to-
Nucleotide SequenceCP000720 (complete ICE sequence in this genome)
Replicon chromosome (4723306 bp, Project:16070) [NC_009708]
Genome coordinates4157207..4221900
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of YAPI(IP31758) form CP000720
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1YpsIP31758_36834153449..4154006 [-], 558152959357 iron-sulfur cluster-binding protein
2YpsIP31758_36844154029..4156044 [-], 2016152959951 putative anaerobic formate dehydrogenase, iron-sulfur subunit
3YpsIP31758_36854156464..4157039 [+], 576152960361 transcriptional regulator, TetR family
4YpsIP31758_36864157513..4158481 [-], 969152960638  [UniProt]  [KEGG]putative phage integrase
5YpsIP31758_36874158523..4159719 [-], 1197152960334  [UniProt]  [KEGG]putative helicase
6YpsIP31758_36884159911..4160558 [+], 648152961464  [UniProt]  [KEGG]conserved domain protein
7YpsIP31758_36894160572..4161477 [-], 906152961247  [UniProt]  [KEGG]conserved hypothetical protein
8YpsIP31758_36904161587..4162558 [-], 972152958518  [UniProt]  [KEGG]antirestriction protein
9YpsIP31758_36914163226..4163657 [+], 432152962114  [UniProt]  [KEGG]conserved hypothetical protein
10YpsIP31758_36924163688..4167947 [+], 4260152959123  [UniProt]  [KEGG]RHS/YD repeat protein
11YpsIP31758_36934167963..4168580 [+], 618152959006  [UniProt]  [KEGG]conserved hypothetical protein
12YpsIP31758_36944168820..4169257 [+], 438152960317  [UniProt]  [KEGG]hypothetical protein
13YpsIP31758_36954169387..4169941 [+], 555152959600  [UniProt]  [KEGG]conserved hypothetical protein
14YpsIP31758_36964170053..4170577 [+], 525152962120  [UniProt]  [KEGG]conserved hypothetical protein
15YpsIP31758_36974170921..4171811 [-], 891152961529  [UniProt]  [KEGG]conserved hypothetical protein
16YpsIP31758_36984172940..4173236 [+], 297152961410  [UniProt]  [KEGG]conserved domain protein
17YpsIP31758_36994173268..4174791 [-], 1524152961048  [UniProt]  [KEGG]putative membrane protein
18YpsIP31758_37004174791..4176197 [-], 1407152960490  [UniProt]  [KEGG]conserved hypothetical protein
19YpsIP31758_37014176218..4177171 [-], 954152960198  [UniProt]  [KEGG]conserved hypothetical protein
20YpsIP31758_37024177168..4177572 [-], 405152960305  [UniProt]  [KEGG]conserved hypothetical protein
21YpsIP31758_37034178309..4180441 [+], 2133152959839  [UniProt]  [KEGG]conserved hypothetical protein
22YpsIP31758_37044181327..4182028 [+], 702152959148  [UniProt]  [KEGG]putative lipoprotein
23YpsIP31758_37054182460..4185306 [-], 2847152958670  [UniProt]  [KEGG]conserved hypothetical protein
24YpsIP31758_37064185306..4185707 [-], 402152961879  [UniProt]  [KEGG]putative lipoprotein
25YpsIP31758_37074185720..4187237 [-], 1518152961919  [UniProt]  [KEGG]conserved hypothetical protein
26YpsIP31758_37084187234..4188100 [-], 867152958834  [UniProt]  [KEGG]conserved hypothetical protein
27YpsIP31758_37094188097..4188750 [-], 654152959350  [UniProt]  [KEGG]conserved hypothetical protein
28YpsIP31758_37104188747..4189121 [-], 375152959800  [UniProt]  [KEGG]conserved hypothetical protein
29YpsIP31758_37114189131..4189481 [-], 351152960184  [UniProt]  [KEGG]conserved hypothetical protein
30YpsIP31758_37124189497..4189742 [-], 246152962385  [UniProt]  [KEGG]hypothetical protein
31YpsIP31758_37134189742..4190050 [-], 309152958699  [UniProt]  [KEGG]plasmid conserved hypothetical protein, RAQPRD family
32YpsIP31758_37144190571..4191458 [-], 888152959568  [UniProt]  [KEGG]hypothetical protein
33YpsIP31758_37154191576..4193381 [-], 1806152961023  [UniProt]  [KEGG]conserved hypothetical protein
34YpsIP31758_37164193378..4194616 [-], 1239152960590  [UniProt]  [KEGG]conserved hypothetical protein
35YpsIP31758_37174194737..4195489 [-], 753152961305  [UniProt]  [KEGG]conserved hypothetical protein
36YpsIP31758_37184195489..4197609 [-], 2121152960852  [UniProt]  [KEGG]conserved hypothetical protein
37YpsIP31758_37194197668..4198189 [-], 522152959972  [UniProt]  [KEGG]conserved hypothetical protein
38YpsIP31758_37204198186..4198824 [-], 639152959392  [UniProt]  [KEGG]transglycosylase SLT domain protein
39YpsIP31758_37214198803..4199621 [-], 819152958462  [UniProt]  [KEGG]conserved hypothetical protein
40YpsIP31758_37224199713..4200045 [-], 333152961957  [UniProt]  [KEGG]conserved hypothetical protein
41YpsIP31758_37234200035..4200241 [-], 207152962152  [UniProt]  [KEGG]hypothetical protein
42YpsIP31758_37244200453..4200809 [+], 357152961042  [UniProt]  [KEGG]DNA binding protein
43YpsIP31758_37254200871..4201002 [+], 132152959784  [UniProt]  [KEGG]hypothetical protein
44YpsIP31758_37264201125..4202057 [-], 933152960262  [UniProt]  [KEGG]putative transposase
45YpsIP31758_37274202151..4203428 [-], 1278152961607  [UniProt]  [KEGG]bacterial shufflon proteinVF
46YpsIP31758_37284203432..4204100 [-], 669152962009  [UniProt]  [KEGG]type IV prepilin peptidaseVF
47pilS4204097..4204684 [-], 588152962230  [UniProt]  [KEGG]type IV pilus biogenesis proteinVF
48pilR4204699..4205799 [-], 1101152961091  [UniProt]  [KEGG]type IV pilus biogenesis protein PilRVF
49YpsIP31758_37314205801..4207354 [-], 1554152961329  [UniProt]  [KEGG]type IV secretion system proteinVF
50pilP14207364..4207858 [-], 495152959636  [UniProt]  [KEGG]type IV pilus biogenesis protein PilPVF
51YpsIP31758_37334207845..4209182 [-], 1338152959987  [UniProt]  [KEGG]pilin accessory protein PilOVF
52YpsIP31758_37344209185..4210777 [-], 1593152958781  [UniProt]  [KEGG]type IVB pilus formation outer membrane protein, R64 PilN familyVF
53YpsIP31758_37354210791..4211228 [-], 438152960399  [UniProt]  [KEGG]PilM proteinVF
54YpsIP31758_37364211230..4212300 [-], 1071152960886  [UniProt]  [KEGG]pilus biogenesis proteinVF
55YpsIP31758_37374212438..4212824 [-], 387152959655  [UniProt]  [KEGG]PIN domain proteinTA
56YpsIP31758_37384212821..4213054 [-], 234152960233  [UniProt]  [KEGG]prevent-host-death family proteinTA
57YpsIP31758_37394213225..4213656 [-], 432152958746  [UniProt]  [KEGG]conserved hypothetical protein
58YpsIP31758_37404213859..4214401 [-], 543152959345  [UniProt]  [KEGG]conserved hypothetical protein
59YpsIP31758_37414214398..4214517 [-], 120152960637  [UniProt]  [KEGG]hypothetical protein
60YpsIP31758_37424214702..4215460 [-], 759152961213  [UniProt]  [KEGG]conserved hypothetical protein
61YpsIP31758_37434215620..4216819 [-], 1200152961011  [UniProt]  [KEGG]conserved hypothetical protein
62YpsIP31758_37444217055..4217216 [-], 162152959373  [UniProt]  [KEGG]conserved hypothetical protein
63YpsIP31758_37454217285..4217866 [-], 582152960880  [UniProt]  [KEGG]conserved hypothetical protein
64YpsIP31758_37464217863..4219509 [-], 1647152960430  [UniProt]  [KEGG]conserved hypothetical protein
65dnaB24219538..4220899 [-], 1362152960358  [UniProt]  [KEGG]replicative DNA helicase
66YpsIP31758_37484220892..4221773 [-], 882152959812  [UniProt]  [KEGG]conserved hypothetical protein
67YpsIP31758_37494222334..4224904 [-], 2571152959215 viral enhancin protein
68YpsIP31758_37504224919..4225086 [-], 168152959046 conserved hypothetical protein
69YpsIP31758_37514225316..4225741 [+], 426152959393 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins63Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(2) Eppinger M; Rosovitz MJ; Fricke WF; Rasko DA; Kokorina G; Fayolle C; Lindler LE; Carniel E; Ravel J (2007). The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet. 3(8):e142. [PudMed:17784789]
 
in_silico in silico analysis literature