ICEberg
ICEberg ID436
NamePPHGI-1
FamilyUnclassified
OrganismPseudomonas syringae pv. phaseolicola 1302A
Size (bp)105966
GC content [Genome] (%)54%
Insertion sitetRNA-Lys
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAJ870974 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1298..107263
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of PPHGI-1 form AJ870974
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1soj1439..2299 [+], 86168637837 ParA-like chromosome partitioning protein
2pph022301..3731 [+], 143168637838 hypothetical protein
3dnaB3798..5078 [+], 128168637839 replicative DNA helicase DnaB
4pph045222..5416 [+], 19568637840 hypothetical protein
5pph055418..5825 [+], 40868637841 hypothetical protein
6pph065919..6320 [+], 40268637842 putative DNA-binding protein
7pph076323..8083 [+], 176168637843 hypothetical protein
8pph088120..8857 [+], 73868637844 hypothetical protein
9pph098854..10227 [+], 137468637845 hypothetical protein
10pph1010699..11478 [+], 78068637846 hypothetical protein
11pph1111475..12059 [+], 58568637847 hypothetical protein
12ssb12061..12525 [+], 46568637848 single-stranded DNA-binding protein
13pph1312728..12973 [+], 24668637849 hypothetical protein
14pph1413340..15226 [+], 188768637850 hypothetical protein
15pph1515229..17187 [+], 195968637851 superfamily II DNA/RNA helicase
16avrPphB17471..18274 [+], 80468637852 cysteine protease
17pilL18896..19870 [+], 97568637853 type IV pilus protein
18pilN19867..21603 [+], 173768637854 type IV pilus protein
19pilO21605..22963 [+], 135968637855 type IV pilus protein
20pilP23004..23555 [+], 55268637856 type IV pilus protein
21pilQ23552..25183 [+], 163268637857 type IV pilus protein
22pilR25269..26264 [+], 99668637858 type IV pilus protein
23pilS26302..26826 [+], 52568637859 type IV pilus protein
24pilU26829..27761 [+], 93368637860 PilU ATPase
25pilV27758..29164 [+], 140768637861 minor type IV pilin subunit PilV
26pilM29196..29636 [+], 44168637862 type IV pilus protein
27pph2729905..30390 [+], 48668637863 hypothetical protein
28pph2830451..30744 [+], 29468637864 hypothetical protein
29pph2930901..33294 [+], 239468637865 bacteriophytochrome
30pph3033287..33748 [+], 46268637866 two component response regulator
31pph3133782..36142 [+], 236168637867 sensory box histidine kinase/response regulator
32pph3236234..36542 [+], 30968637868 hypothetical protein
33pph3336802..37005 [+], 20468637869 hypothetical protein
34pph3437624..39537 [+], 191468637870 methyl-accepting chemotaxis protein
35pph3539952..41577 [+], 162668637871 methyl-accepting chemotaxis protein
36pph3641584..41889 [+], 30668637872 hypothetical protein
37pph37c42169..43437 [-], 126968637873 3-oxoacyl-acyl carrier protein synthase II
38pph3843543..44022 [+], 48068637874 hypothetical protein
39pph3944092..44523 [+], 43268637875 hypothetical protein
40pph40c44768..45157 [-], 39068637876 hypothetical protein
41pph41c45284..45658 [-], 37568637877 MvaT-like transcriptional regulator
42pph4246279..48315 [+], 203768637878 sensory box histidine kinase/response regulator
43pph4348331..48714 [+], 38468637879 methyl-accepting chemotaxis protein
44pph44c48687..49463 [-], 77768637880 putative lipoprotein
45pph45c49518..49949 [-], 43268637881 CheY-like response regulator receiver
46pph4650091..51215 [+], 112568637882 signal transduction histidine kinase
47pph4751241..51591 [+], 35168637883 hypothetical protein
48pph4852124..52621 [+], 49868637884 hypothetical protein
49pph4952768..53007 [+], 24068637885 hypothetical protein
50pph5053217..53882 [+], 66668637886 GAF domain protein
51salC54259..55053 [-], 79568637887 putative DNA-binding protein SalC
52-55370..55666 [-], 29768637888 hypothetical protein
53salA56578..57432 [+], 85568637889 DNA-binding protein SalA
54xerD57874..58833 [-], 96068637890 XerD-like site-specific recombinase
55pph5559129..60667 [+], 153968637891 ATPase
56pph5660955..62976 [+], 202268637892 Topoisomerase IA
57pph5763796..64062 [+], 26768637893 hypothetical protein
58pph5864394..64729 [+], 33668637894 hypothetical protein
59pph5965032..65262 [+], 23168637895 hypothetical protein
60pph6065359..65931 [+], 57368637896 hypothetical protein
61pph6166228..66545 [+], 31868637897 hypothetical protein
62pph6266634..66969 [+], 33668637898 hypothetical protein
63pph6367065..67676 [+], 61268637899 hypothetical protein
64pph6467765..68289 [+], 52568637900 hypothetical protein
65pph6568356..68955 [+], 60068637901 hypothetical protein
66pph6668985..70436 [+], 145268637902 Adenine-specific DNA methylase
67pph6770543..72801 [+], 225968637903 superfamily II DNA/RNA helicase
68pph6873350..74060 [+], 71168637904 hypothetical protein
69pph6974069..74815 [+], 74768637905 hypothetical protein
70pph7074800..75357 [+], 55868637906 soluble lytic murein transglycosylase
71pph7175354..75860 [+], 50768637907 hypothetical protein
72traG75872..78031 [+], 216068637908 putative TraG family conjugative protein
73pph7378071..78820 [+], 75068637909 hypothetical protein
74pph7479269..80294 [+], 102668637910 superfamily I DNA and RNA helicase
75pph7580304..80636 [+], 33368637911 hypothetical protein
76pph7680716..81078 [+], 36368637912 candidate type III effector Hop protein
77pph7781075..81314 [+], 24068637913 hypothetical protein
78pph7881403..81702 [+], 30068637914 hypothetical protein
79pph7981718..82110 [+], 39368637915 hypothetical protein
80pph8082107..82775 [+], 66968637916 hypothetical protein
81pph8182772..83695 [+], 92468637917 hypothetical protein
82pph8283685..85169 [+], 148568637918 hypothetical protein
83pph8385147..85602 [+], 45668637919 signal recognition particle GTPase
84virB485602..88610 [+], 300968637920 VirB4 component
85pph8588607..88906 [+], 30068637921 hypothetical protein
86pph8688903..89580 [+], 67868637922 protein-disulfide isomerase
87pph8790130..90444 [+], 31568637923 hypothetical protein
88pph8890698..91171 [+], 47468637924 conserved hypothetical protein
89pph8991168..92106 [+], 93968637925 hypothetical protein
90pph9092127..93494 [+], 136868637926 hypothetical protein
91pph9193497..93871 [+], 37568637927 hypothetical protein
92pph9293868..95400 [+], 153368637928 hypothetical protein
93pph93c95457..95882 [-], 42668637929 hypothetical protein
94pph94c96218..98014 [-], 179768637930 ATP-dependent DNA helicase
95pph95c98016..100148 [-], 213368637931 hypothetical protein
96rulB100538..101821 [-], 128468637932 nucleotidyltransferase/DNA polymerase
97rulA101808..102242 [-], 43568637933 SOS-response transcriptional repressor
98pph98102386..103048 [+], 66368637934 hypothetical protein
99pph99103651..105387 [+], 173768637935 predicted HD-superfamily hydrolase
100xerC105384..106805 [+], 142268637936 putative integrase XerC
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins0Fasta
(1) Godfrey SA et al. (2011). The stealth episome: suppression of gene expression on the excised genomic island PPHGI-1 from Pseudomonas syringae pv. phaseolicola. PLoS Pathog. 7(3):e1002010. [PudMed:21483484] experimental
(2) Pitman AR et al. (2005). Exposure to host resistance mechanisms drives evolution of bacterial virulence in plants. Curr Biol. 15(24):2230-5. [PudMed:16360685] experimental
 
experimental experimental literature