ICEberg
ICEberg ID46
NameTn4371
FamilyTn4371
OrganismRalstonia oxalatica A5
Size (bp)54657
GC content [Genome] (%)63.5
Insertion siteTTTTTCAT
FunctionDegrade biphenyl and 4-chlorobiphenyl
Species that ICE can be transferred toCupriavidus metallidurans
Nucleotide SequenceAJ536756 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..54657
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of Tn4371 form AJ536756
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1int181..1389 [+], 120927817681  [UniProt] putative site specific recombinase
2-1469..1765 [+], 29727817682  [UniProt] hypothetical protein
3-1762..2169 [+], 40827817683  [UniProt] hypothetical protein
4-2210..3385 [-], 117627817684  [UniProt] hypothetical protein
5-3388..4533 [+], 114627817685  [UniProt] putative transposase
6-4813..5835 [-], 102327817686  [UniProt] hypothetical protein
7-5989..7980 [-], 199227817687  [UniProt] hypothetical protein
8-8072..9871 [-], 180027817688  [UniProt] hypothetical protein
9-9874..12012 [-], 213927817689  [UniProt] hypothetical protein
10-12442..12792 [+], 35127817690  [UniProt] hypothetical protein
11-13054..13410 [-], 35727817691  [UniProt] hypothetical protein
12-13502..13882 [-], 38127817692  [UniProt] hypothetical protein
13-14290..15117 [+], 82827817693  [UniProt] hypothetical proteinVF
14-15194..17266 [+], 207327817694  [UniProt] hypothetical protein
15-17330..17539 [+], 21027817695  [UniProt] hypothetical protein
16-18015..18785 [-], 77127817696  [UniProt] hypothetical protein
17-18782..19276 [-], 49527817697  [UniProt] putative transcription regulator
18-19931..20329 [+], 39927817698  [UniProt] hypothetical protein
19-20697..20990 [-], 29427817699  [UniProt] putative transcription regulator
20-21160..21561 [+], 40227817700  [UniProt] hypothetical protein
21-21903..22664 [+], 76227817701  [UniProt] hypothetical protein
22-22748..23038 [+], 29127817702  [UniProt] hypothetical protein
23repA23065..23922 [+], 85827817703  [UniProt] putative replication initiation protein
24parA24188..24826 [+], 63927817704  [UniProt] putative plasmid partition protein
25parB24823..25086 [+], 26427817705  [UniProt] hypothetical protein
26-25083..25616 [+], 53427817706  [UniProt] hypothetical protein
27traF25613..26212 [+], 60027817707  [UniProt] putative plasmid conjugal transfer transmembrane protein
28-26607..28160 [+], 155427817708  [UniProt] hypothetical protein
29bphS28524..29468 [-], 94527817709  [UniProt] transcription regulator
30bphE29962..30768 [+], 80727817710  [UniProt] 2-oxopent-4-enoate hydratase
31bphG30771..31712 [+], 94227817711  [UniProt] acetaldehyde dehydrogenase oxidoreductase
32bphF31724..32779 [+], 105627817712  [UniProt] putative 4-hydroxy-2-oxovalerate aldolase transmembrane protein
33bphA133268..34644 [+], 137727817713  [UniProt] biphenyl 2,3-dioxygenase oxidoreductase
34bphA234676..35257 [+], 58227817714  [UniProt] biphenyl 2,3-dioxygenase
35bphA335275..35604 [+], 33027817715  [UniProt] 3-phenylpropionate dioxygenase ferredoxin oxidoreductase
36bphB35623..36453 [+], 83127817716  [UniProt] 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase
37bphC36467..37348 [+], 88227817717  [UniProt] 2,3-dihydroxybiphenyl dioxygenase
38bphD37380..38240 [+], 86127817718  [UniProt] 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
39-38365..39021 [+], 65727817719  [UniProt] hypothetical protein
40bphA439116..40411 [+], 129627817720  [UniProt] 3-phenylpropionate dioxygenase ferredoxin oxidoreductase
41traR40563..41606 [+], 104427817721  [UniProt] transcription regulator
42traG42118..44121 [+], 200427817722  [UniProt] putative conjugal transfer protein
43-44118..44582 [+], 46527817723  [UniProt] hypothetical protein
44trbB44579..45616 [+], 103827817724  [UniProt] putative mating pair formation protein
45trbC45622..46005 [+], 38427817725  [UniProt] putative mating pair formation transmembrane protein
46trbE46287..48740 [+], 245427817726  [UniProt] putative mating pair formation protein
47trbJ48737..49492 [+], 75627817727  [UniProt] putative mating pair formation protein
48-49504..49803 [+], 30027817728  [UniProt] hypothetical protein
49trbL49800..51149 [+], 135027817729  [UniProt] putative mating pair formation transmembrane protein
50trbF51168..51872 [+], 70527817730  [UniProt] putative mating pair formation protein
51trbG51869..52849 [+], 98127817731  [UniProt] putative mating pair formation protein
52trbI52852..54132 [+], 128127817732  [UniProt] putative mating pair formation transmembrane protein
53-54129..54374 [+], 24627817733  [UniProt] hypothetical protein
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins53Fasta
(1) Toussaint A; Merlin C; Monchy S; Benotmane MA; Leplae R; Mergeay M; Springael D (2003). The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microbiol. 69(8):4837-45. [PudMed:12902278] experimental
(2) Merlin C; Springael D; Toussaint A (1999). Tn4371: A modular structure encoding a phage-like integrase, a Pseudomonas-like catabolic pathway, and RP4/Ti-like transfer functions. Plasmid. 41(1):40-54. [PudMed:9887305] experimental
(3) Springael D; Kreps S; Mergeay M (1993). Identification of a catabolic transposon, Tn4371, carrying biphenyl and 4-chlorobiphenyl degradation genes in Alcaligenes eutrophus A5. J Bacteriol. 175(6):1674-81. [PudMed:8383664] experimental
 
experimental experimental literature