ICEberg
ICEberg ID47
NameTn5251 (part of Tn5253)
FamilyTn916
OrganismStreptococcus pneumoniae DP1322
Size (bp)18033
GC content [Genome] (%)38.8
Insertion siteAT rich regions
FunctionTetracycline resistance
Species that ICE can be transferred toStreptococcus pneumoniae; Streptococcus gordonii; Streptococcus pyogenes; Streptococcus agalactiae;Enterococcus faecalis; Bacillus subtilis
Nucleotide SequenceFJ711160 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..18033
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of Tn5251 (part of Tn5253) form FJ711160
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-175..1392 [-], 1218259906610  [UniProt] integrase
2-1474..1677 [-], 204259906611  [UniProt] excisionase
3-1661..1912 [+], 252259906612  [UniProt] unknown
4-2138..2368 [-], 231259906613  [UniProt] unknown
5-2365..2787 [-], 423259906614  [UniProt] putative sigma factor
6-3016..3162 [-], 147259906615  [UniProt] unknown
7-3292..3645 [+], 354259906616  [UniProt] putative transcriptional regulator
8-3705..3893 [-], 189259906617  [UniProt] unknown
9-3991..5910 [-], 1920259906618  [UniProt] tetracycline resistance proteinAR
10-5926..6012 [-], 87259906619  [UniProt] tet(M) leader peptide
11-6287..7219 [-], 933259906620  [UniProt] unknown
12-7216..8217 [-], 1002259906621  [UniProt] putative cell wall hydrolaseVF
13-8214..10391 [-], 2178259906622  [UniProt] unknown
14-10394..12841 [-], 2448259906623  [UniProt] type IV secretion protein virB4
15-12825..13331 [-], 507259906624  [UniProt] unknown
16-13306..13803 [-], 498259906625  [UniProt] antirestriction protein
17-13920..14141 [-], 222259906626  [UniProt] unknown
18-14184..15389 [-], 1206259906627  [UniProt] relaxase
19-15567..16952 [-], 1386259906628  [UniProt] FtsK-SpoIIIE family protein
20-16981..17364 [-], 384259906629  [UniProt] unknown
21-17383..17697 [-], 315259906630  [UniProt] unknown
22-17720..17839 [-], 120259906631  [UniProt] unknown
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins22Fasta
(1) Santoro F; Oggioni MR; Pozzi G; Iannelli F (2010). Nucleotide sequence and functional analysis of the tet (M)-carrying conjugative transposon Tn5251 of Streptococcus pneumoniae. FEMS Microbiol Lett. 308(2):150-8. [PudMed:20487027] experimental
(2) Provvedi R; Manganelli R; Pozzi G (1996). Characterization of conjugative transposon Tn5251 of Streptococcus pneumoniae. FEMS Microbiol Lett. 135(2-3):231-6. [PudMed:8595862] experimental
(3) Ayoubi P; Kilic AO; Vijayakumar MN (1991). Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252. J Bacteriol. 173(5):1617-22. [PudMed:1847905] experimental
 
experimental experimental literature