ICEberg
ICEberg ID49
NameICECmeCH34-1
FamilyICEclc
OrganismCupriavidus metallidurans CH34
Size (bp)109581
GC content [Genome] (%)65 [64]
Insertion sitetRNA-Gly(Rmet_R0039)
FunctionMercuric resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP000352 (complete ICE sequence in this genome)
Replicon chromosome 1 (3928089 bp, Project:250) [NC_007973]
Genome coordinates2508632..2618212
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICECmeCH34-1 form CP000352
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Rmet_65182503879..2504091 [-], 213288227227 hypothetical protein
2Rmet_22822504104..2504430 [-], 32793355072 conserved hypothetical protein (secreted)
3Rmet_22832504698..2505786 [-], 108993355073 conserved hypothetical protein; putative membrane protein
4yeiE2505889..2506806 [+], 91893355074 putative DNA-binding transcriptional regulator
5Rmet_22852506827..2508053 [-], 122793355075 monovalent cation:proton antiporter (CPA2 family)
6Rmet_22872509038..2509493 [-], 45693355077  [UniProt]  [KEGG]conserved hypothetical protein; putative membrane protein
7Rmet_22882509989..2510735 [+], 74793355078  [UniProt]  [KEGG]conserved hypothetical protein
8alpA2510854..2511066 [+], 21393355079  [UniProt]  [KEGG]DNA-binding transcriptional activatorVF
9soj2511109..2511984 [+], 87693355080  [UniProt]  [KEGG]ATPase involved in plasmid partitioning Soj
10Rmet_22912511968..2512237 [+], 27093355081  [UniProt]  [KEGG]conserved hypothetical protein
11Rmet_22922512230..2513909 [+], 168093355082  [UniProt]  [KEGG]putative regulator
12Rmet_22932513924..2514484 [+], 56193355083  [UniProt]  [KEGG]putative regulator
13Rmet_22942514488..2515726 [+], 123993355084  [UniProt]  [KEGG]conserved hypothetical protein
14Rmet_22952516156..2516947 [+], 79293355085  [UniProt]  [KEGG]conserved hypothetical protein
15inrR2516944..2517471 [+], 52893355086  [UniProt]  [KEGG]Integrase regulator R
16ssb22517545..2517985 [+], 44193355087  [UniProt]  [KEGG]single-stranded DNA binding protein
17topB22518269..2520299 [+], 203193355088  [UniProt]  [KEGG]DNA topoisomerase III
18Rmet_22992521023..2521658 [-], 63693355089  [UniProt]  [KEGG]Cation efflux system protein
19Rmet_65192521865..2522035 [-], 171288227228  [UniProt] hypothetical protein
20Rmet_23002521983..2522282 [-], 30093355090  [UniProt]  [KEGG]hypothetical protein
21Rmet_65202522043..2522279 [+], 237288227229  [UniProt] conserved hypothetical protein
22Rmet_23012522292..2522666 [+], 37593355091  [UniProt]  [KEGG]hypothetical protein
23pbrR22522734..2523132 [-], 39993355092  [UniProt]  [KEGG]transcriptional regulator, MerR-family
24cadA2523182..2526136 [+], 295593355093  [UniProt]  [KEGG]lead/cadmium-transporting ATPase (cation efflux ATPase)
25pbrC22526140..2526640 [+], 50193355094  [UniProt]  [KEGG]prolipoprotein signal peptidase (signal peptidase II)
26Rmet_23052526977..2527288 [+], 31293355095  [UniProt]  [KEGG]conserved hypothetical protein
27Rmet_23062527425..2527838 [+], 41493355096  [UniProt]  [KEGG]conserved hypothetical protein
28Rmet_23072527860..2528252 [+], 39393355097  [UniProt]  [KEGG]conserved hypothetical protein
29Rmet_23082528435..2529121 [+], 68793355098  [UniProt]  [KEGG]conserved hypothetical protein
30Rmet_23092529205..2529942 [+], 73893355099  [UniProt]  [KEGG]conserved hypothetical protein
31Rmet_23102530040..2530318 [+], 27993355100  [UniProt]  [KEGG]conserved hypothetical protein
32Rmet_23112530607..2531431 [+], 82593355101  [UniProt]  [KEGG]conserved hypothetical protein (protein belongs to CMGI-1)
33merR2531693..2532100 [-], 40893355102  [UniProt]  [KEGG]Mercuric resistance operon regulatory protein
34merT2532172..2532522 [+], 35193355103  [UniProt]  [KEGG]Mercuric transport protein (Mercury ion transport protein)
35merP2532535..2532822 [+], 28893355104  [UniProt]  [KEGG]Mercuric transport protein periplasmic component precursor (Periplasmic mercury ion-binding protein) (Mercury scavenger protein)
36merA'2532833..2533951 [+], 1119pseudogene -
37merA''2533662..2534519 [+], 858288227230  [UniProt] mercuric reductase
38tnpA2534538..2535053 [+], 516pseudogene -
39Rmet_23172534894..2535535 [+], 642pseudogene -
40Rmet_23182535605..2535865 [+], 26193355106  [UniProt]  [KEGG]conserved hypothetical protein
41Rmet_23192536173..2536457 [+], 28593355107  [UniProt]  [KEGG]conserved hypothetical protein
42Rmet_23202536675..2537673 [+], 99993355108  [UniProt]  [KEGG]conserved hypothetical protein
43yubP2537819..2538646 [+], 82893355109  [UniProt]  [KEGG]conserved hypothetical proteinVF
44Rmet_23222538741..2539430 [+], 69093355110  [UniProt]  [KEGG]conserved hypothetical protein
45cggAII2539525..2539866 [+], 34293355111  [UniProt]  [KEGG]Conserved plasmid protein
46Rmet_23242539971..2540378 [+], 40893355112  [UniProt]  [KEGG]conserved hypothetical protein
47Rmet_23252540395..2540655 [+], 26193355113  [UniProt]  [KEGG]conserved hypothetical protein
48Rmet_23262540732..2541379 [+], 64893355114  [UniProt]  [KEGG]conserved hypothetical protein
49Rmet_23272541444..2542553 [+], 111093355115  [UniProt]  [KEGG]putative adenine-specific DNA methyltransferase
50Rmet_23282542604..2542924 [+], 32193355116  [UniProt]  [KEGG]conserved hypothetical protein
51Rmet_23292543014..2543319 [+], 30693355117  [UniProt]  [KEGG]conserved hypothetical protein
52Rmet_23302543456..2545735 [+], 228093355118  [UniProt]  [KEGG]Putative plasmid-related DNA/RNA helicase
53pilL2545874..2546473 [+], 60093355119  [UniProt]  [KEGG]pilL lipoprotein (type IV pili)VF
54Rmet_23322546470..2547114 [+], 64593355120  [UniProt]  [KEGG]conserved putative exported protein
55Rmet_23332547127..2547864 [+], 73893355121  [UniProt]  [KEGG]conserved putative exported protein
56Rmet_23342547846..2548436 [+], 59193355122  [UniProt]  [KEGG]putative lytic transglycosylase, catalytic
57Rmet_23352548433..2548981 [+], 54993355123  [UniProt]  [KEGG]putative exported protein
58virD42548986..2551175 [+], 219093355124  [UniProt]  [KEGG]VirD4, Type IV secretory pathway, VirD4 components
59Rmet_23372551172..2551921 [+], 75093355125  [UniProt]  [KEGG]conserved hypothetical protein; putative membrane protein
60Rmet_23382551962..2554586 [-], 262593355126  [UniProt]  [KEGG]conserved hypothetical protein
61Rmet_23392554596..2555321 [-], 72693355127  [UniProt]  [KEGG]conserved hypothetical protein
62Rmet_23402555360..2556262 [-], 90393355128  [UniProt]  [KEGG]conserved hypothetical protein
63Rmet_23412556262..2556915 [-], 65493355129  [UniProt]  [KEGG]conserved hypothetical protein
64Rmet_65232556759..2557229 [-], 471288227231  [UniProt] conserved hypothetical protein
65Rmet_23422557226..2558140 [-], 91593355130  [UniProt]  [KEGG]putative AAA ATPase, central region
66Rmet_23432558158..2558733 [-], 57693355131  [UniProt]  [KEGG]conserved hypothetical proteinTA
67Rmet_23442558730..2559200 [-], 47193355132  [UniProt]  [KEGG]putative excisionaseTA
68Rmet_23452559404..2559787 [+], 38493355133  [UniProt]  [KEGG]conserved hypothetical protein
69Rmet_23462559784..2560017 [+], 23493355134  [UniProt]  [KEGG]conserved hypothetical protein
70Rmet_23472560034..2560393 [+], 36093355135  [UniProt]  [KEGG]conserved hypothetical protein
71Rmet_23482560406..2560804 [+], 39993355136  [UniProt]  [KEGG]conserved hypothetical protein
72Rmet_23492560801..2561493 [+], 69393355137  [UniProt]  [KEGG]conserved hypothetical protein
73Rmet_23502561490..2562401 [+], 91293355138  [UniProt]  [KEGG]conserved hypothetical protein
74Rmet_23512562391..2563809 [+], 141993355139  [UniProt]  [KEGG]conserved hypothetical protein
75Rmet_23522563790..2564230 [+], 44193355140  [UniProt]  [KEGG]Putative secreted protein
76Rmet_23532564230..2567121 [+], 289293355141  [UniProt]  [KEGG]Type IV secretory pathway, VirB4 components
77Rmet_23542567146..2567910 [+], 76593355142  [UniProt]  [KEGG]putative exported protein
78radC2568086..2568580 [+], 49593355143  [UniProt]  [KEGG]DNA binding protein, possibly associated to lesionsVF
79Rmet_23562568745..2569191 [+], 44793355144  [UniProt]  [KEGG]conserved hypothetical protein; putative exported protein
80Rmet_23572569188..2570138 [+], 95193355145  [UniProt]  [KEGG]putative exported protein
81Rmet_23582570148..2571542 [+], 139593355146  [UniProt]  [KEGG]putative membrane protein
82Rmet_23592571539..2571895 [+], 35793355147  [UniProt]  [KEGG]putative membrane protein
83Rmet_23602571911..2573458 [+], 154893355148  [UniProt]  [KEGG]conserved hypothetical protein (membrane)
84Rmet_23612573474..2573833 [-], 36093355149  [UniProt]  [KEGG]conserved hypothetical protein
85Rmet_23622573907..2574539 [-], 63393355150  [UniProt]  [KEGG]conserved hypothetical protein
86Rmet_23632574552..2575178 [-], 62793355151  [UniProt]  [KEGG]conserved hypothetical protein
87Rmet_23642575344..2577386 [+], 204393355152  [UniProt]  [KEGG]relaxase
88Rmet_23652577434..2578429 [-], 99693355153  [UniProt]  [KEGG]putative transcriptional regulator
89Rmet_23662578766..2579635 [+], 87093355154  [UniProt]  [KEGG]putative enoyl-CoA hydratase/isomerase
90Rmet_23672579695..2580120 [-], 42693355155  [UniProt]  [KEGG]conserved hypothetical protein
91Rmet_23682580177..2580554 [-], 37893355156  [UniProt]  [KEGG]Alkylhydroperoxidase AhpD core
92Rmet_23692580631..2581857 [-], 122793355157  [UniProt]  [KEGG]Major facilitator superfamily MFS_1
93ygaV2582007..2582318 [+], 31293355158  [UniProt]  [KEGG]DNA-binding transcriptional regulator
94Rmet_23712582341..2582868 [+], 52893355159  [UniProt]  [KEGG]Putative detoxifying sulphurtransferase ; inner membrane protein
95Rmet_23722582975..2583934 [+], 96093355160  [UniProt]  [KEGG]putative hydroxyacylglutathione hydrolase
96Rmet_23732583983..2585653 [+], 167193355161  [UniProt]  [KEGG]conserved hypothetical protein
97Rmet_23742585700..2586179 [+], 48093355162  [UniProt]  [KEGG]hypothetical protein
98ccoN2586172..2587728 [+], 155793355163  [UniProt]  [KEGG]cytochrome-c oxidase
99ccoO2587785..2588366 [+], 58293355164  [UniProt]  [KEGG]Cytochrome C oxidase, mono-heme subunit
100Rmet_23772588507..2589181 [+], 67593355165  [UniProt]  [KEGG]putative cytochrome c4
101Rmet_23782589414..2590262 [+], 84993355166  [UniProt]  [KEGG]Putative cytochrome c (fragment)
102ctpA12590243..2592501 [+], 225993355167  [UniProt]  [KEGG]metal transporter ATPase
103cutE2592526..2594124 [+], 159993355168  [UniProt]  [KEGG]Apolipoprotein N-acyltransferase
104armS (delta)2594278..2594646 [-], 369pseudogene -
105tnpA2594664..2595692 [+], 102993355170  [UniProt]  [KEGG]transposase IS1088
106armS (delta)2595681..2596769 [-], 1089pseudogene -
107armR2596766..2597434 [-], 66993355172  [UniProt]  [KEGG]ArmR, DNA-binding response regulator (QseB)VF
108ccmA2597603..2598226 [+], 62493355173  [UniProt]  [KEGG]heme exporter subunit ; ATP-binding component of ABC superfamilyVF
109ccmB2598223..2598909 [+], 68793355174  [UniProt]  [KEGG]heme exporter subunit; membrane component of ABC superfamily, cytochrome c maturation protein B
110ccmC2598922..2599659 [+], 73893355175  [UniProt]  [KEGG]heme exporter subunit; membrane component of ABC superfamily; protein CVF
111ccmD2599656..2599847 [+], 19293355176  [UniProt]  [KEGG]putative heme exporter protein D,cytochrome c-type biogenesis protein
112ccmE2599831..2600277 [+], 44793355177  [UniProt]  [KEGG]periplasmic heme chaperone
113ccmF2600281..2602242 [+], 196293355178  [UniProt]  [KEGG]heme lyase, CcmF subunit
114ccmG2602239..2602763 [+], 52593355179  [UniProt]  [KEGG]periplasmic thioredoxin of cytochrome c-type biogenesis
115cycL2602760..2603215 [+], 45693355180  [UniProt]  [KEGG]Cytochrome c-type biogenesis protein cycL precursor
116cycH2603212..2604093 [+], 88293355181  [UniProt]  [KEGG]putative cytochrome c-type biogenesis protein CycH
117dsbD2604191..2606029 [+], 183993355182  [UniProt]  [KEGG]Thiol:disulfide interchange protein
118dsbE2606029..2606865 [+], 83793355183  [UniProt]  [KEGG]putative thiol:disulfide interchange protein
119dsbG2606868..2607641 [+], 77493355184  [UniProt]  [KEGG]Putative thiol:disulfide interchange protein
120Rmet_23972607732..2608538 [+], 80793355185  [UniProt]  [KEGG]putative membrane protein
121Rmet_23982608581..2609957 [+], 137793355186  [UniProt]  [KEGG]putative pyridine nucleotide-disulfide oxidoreductase, class I
122Rmet_23992609989..2610312 [+], 32493355187  [UniProt]  [KEGG]conserved hypothetical protein
123traR22610350..2611240 [+], 89193355188  [UniProt]  [KEGG]transcriptional regulator
124Rmet_24012611262..2611555 [-], 29493355189  [UniProt]  [KEGG]Putative HTH-type transcriptional regulator yazB (modular protein)
125traR2611675..2612331 [+], 65793355190  [UniProt]  [KEGG]transcriptional regulator
126int2612531..2613865 [-], 1335pseudogene -
127tnmB2613969..2614538 [+], 57093355192  [UniProt]  [KEGG]protein involved in mobility of Tn6049
128tnmA2614650..2616089 [+], 144093355193  [UniProt]  [KEGG]transposase Tn6049
129gspA2616086..2616919 [+], 83493355194  [UniProt]  [KEGG]ATPase (type II general secretion pathway) Tn6049
130tnmC2616973..2617188 [+], 21693355195  [UniProt]  [KEGG]conserved hypothetical protein Tn6049
131int2617367..2617987 [-], 621pseudogene -
132pgsA2618628..2619227 [-], 60093355197 phosphatidylglycerophosphate synthetase
133uvrC2619361..2621382 [-], 202293355198 excinuclease UvrABC, endonuclease subunit C
134Rmet_24112621495..2622646 [+], 115293355199 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
regulation Gene may play role in regulation of transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins119Fasta
Identified as part of this study from CP000352