ICEberg
ICEberg ID50
NameICEXcaVe85-1
FamilyICEclc
OrganismXanthomonas campestris pv. vesicatoria str. 85-10
Size (bp)109232
GC content [Genome] (%)64 [65]
Insertion sitetRNA-Gly(XCV_tRNA36)
FunctionStreptomycin resistance
Species that ICE can be transferred to-
Nucleotide SequenceAM039952 (complete ICE sequence in this genome)
Replicon chromosome (5178466 bp, Project:13649) [NC_007508]
Genome coordinates2631723..2740954
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEXcaVe85-1 form AM039952
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1XCV22922626931..2627491 [-], 56178036278 conserved hypothetical protein
2XCV22932627507..2629150 [-], 164478036279 conserved hypothetical protein
3XCV22942629143..2629403 [-], 26178036280 conserved hypothetical protein
4XCV22952629520..2629807 [+], 28878036281 putative ISxac3 transposase (fragment)
5XCV22962629816..2630676 [+], 86178036282 ISxac3 transposase
6XCV22972630792..2631196 [+], 40578036283 ISxac2 transposase
7XCV22982631949..2633892 [+], 194478036284  [UniProt]  [KEGG]phage-related integrase
8XCV22992633942..2634583 [-], 64278036285  [UniProt]  [KEGG]transcriptional regulator, LysR family
9XCV23002634688..2634981 [+], 29478036286  [UniProt]  [KEGG]conserved hypothetical protein
10XCV23012634988..2635878 [-], 89178036287  [UniProt]  [KEGG]transcriptional regulator, LysR family
11XCV23022635915..2636238 [-], 32478036288  [UniProt]  [KEGG]conserved hypothetical protein
12XCV23032636276..2637643 [-], 136878036289  [UniProt]  [KEGG]putative pyridine nucleotide-disulfide oxidoreductase
13XCV23042637684..2638490 [-], 80778036290  [UniProt]  [KEGG]putative membrane protein
14XCV23052638509..2639021 [-], 51378036291  [UniProt]  [KEGG]putative membrane protein
15dsbG2639117..2639890 [-], 77478036292  [UniProt]  [KEGG]thiol:disulfide interchange protein
16XCV23072639893..2640729 [-], 83778036293  [UniProt]  [KEGG]putative thiol disulfide interchange protein
17XCV23082640729..2642519 [-], 179178036294  [UniProt]  [KEGG]putative thiol:disulfide interchange protein
18qseB2642714..2643382 [+], 66978036295  [UniProt]  [KEGG]two-component system regulatory proteinVF
19qseC2643379..2644737 [+], 135978036296  [UniProt]  [KEGG]two-component system sensor protein
20trxB22644801..2645760 [-], 96078036297  [UniProt]  [KEGG]thioredoxin reductase
21XCV23122645802..2646254 [-], 45378036298  [UniProt]  [KEGG]conserved hypothetical protein
22XCV23132646404..2646724 [-], 32178036299  [UniProt]  [KEGG]putative thioredoxin
23XCV23142646915..2647598 [+], 68478036300  [UniProt]  [KEGG]transcriptional regulator, ArsR family
24XCV23152647616..2648260 [-], 64578036301  [UniProt]  [KEGG]putative thiol:disulfide interchange protein
25XCV23162648324..2649223 [-], 90078036302  [UniProt]  [KEGG]putative secreted protein
26XCV23172649362..2649826 [-], 46578036303  [UniProt]  [KEGG]putative secreted protein
27XCV23182649936..2650913 [-], 97878036304  [UniProt]  [KEGG]Tellurite-resistance/dicarboxylate transporter family protein
28XCV23192651001..2651258 [-], 25878036305  [UniProt]  [KEGG]hypothetical protein
29XCV23202651486..2652280 [+], 79578036306  [UniProt]  [KEGG]IS6100 transposase
30XCV23212652252..2652650 [-], 39978036307  [UniProt]  [KEGG]putative transposase (fragment)VF
31XCV23222652856..2654583 [+], 172878036308  [UniProt]  [KEGG]transposase
32XCV23232654679..2655563 [+], 88578036309  [UniProt]  [KEGG]transcriptional regulator, LysR family
33XCV23242655862..2656419 [-], 55878036310  [UniProt]  [KEGG]conserved hypothetical protein
34strB2656581..2657426 [-], 84678036311  [UniProt]  [KEGG]Streptomycin 3''-kinaseAR
35strA2657417..2658220 [-], 80478036312  [UniProt]  [KEGG]Streptomycin 3''-kinaseAR
36XCV23272658286..2658900 [-], 61578036313  [UniProt]  [KEGG]putative resolvase
37XCV23282659004..2659402 [-], 39978036314  [UniProt]  [KEGG]putative TniQ-related transposition protein
38XCV23292659444..2660238 [-], 79578036315  [UniProt]  [KEGG]IS6100 transposase
39XCV23302660237..2660731 [+], 49578036316  [UniProt]  [KEGG]conserved hypothetical protein
40XCV23312660734..2661882 [+], 114978036317  [UniProt]  [KEGG]putative amine oxidase
41XCV23322661901..2663079 [+], 117978036318  [UniProt]  [KEGG]putative aminotransferase
42XCV23332663116..2664144 [+], 102978036319  [UniProt]  [KEGG]putative Zn-dependent alcohol dehydrogenase
43XCV23342664197..2665426 [+], 123078036320  [UniProt]  [KEGG]putative major facilitator superfamily protein
44XCV23352665500..2665979 [-], 48078036321  [UniProt]  [KEGG]transcriptional regulator, MerR family
45copA2665995..2668496 [-], 250278036322  [UniProt]  [KEGG]Copper-translocating P-type ATPase
46XCV23372668664..2669017 [+], 35478036323  [UniProt]  [KEGG]transcriptional regulator, ArsR family
47zitB2669206..2670207 [+], 100278036324  [UniProt]  [KEGG]cobalt-zinc-cadmium resistance protein
48XCV23392670529..2671620 [+], 109278036325  [UniProt]  [KEGG]putative major facilitator superfamily protein
49XCV23402671639..2672433 [-], 79578036326  [UniProt]  [KEGG]IS6100 transposase
50XCV23412672369..2673253 [-], 88578036327  [UniProt]  [KEGG]conserved hypothetical protein
51tniB2673250..2674158 [-], 90978036328  [UniProt]  [KEGG]Transposition protein TniB
52XCV23432674161..2675879 [-], 171978036329  [UniProt]  [KEGG]putative transposase
53XCV23442676064..2676285 [+], 22278036330  [UniProt]  [KEGG]hypothetical protein
54XCV23452676278..2677279 [+], 100278036331  [UniProt]  [KEGG]putative cytosine-specific DNA methylase
55XCV23462677528..2678370 [-], 84378036332  [UniProt]  [KEGG]transcriptional regulator, AraC family
56XCV23472678446..2679021 [+], 57678036333  [UniProt]  [KEGG]conserved hypothetical protein
57XCV23482679213..2679452 [+], 24078036334  [UniProt]  [KEGG]hypothetical protein
58XCV23492679449..2679742 [-], 29478036335  [UniProt]  [KEGG]putative transposase (fragment)AR VF
59XCV23502679943..2680959 [-], 101778036336  [UniProt]  [KEGG]putative major facilitator superfamily protein
60XCV23512681044..2682075 [+], 103278036337  [UniProt]  [KEGG]transposase
61XCV23522682207..2682647 [-], 44178036338  [UniProt]  [KEGG]putative carboxymuconolactone decarboxylase
62XCV23532682750..2683544 [+], 79578036339  [UniProt]  [KEGG]IS6100 transposase
63gcvA2683692..2684627 [+], 93678036340  [UniProt]  [KEGG]transcriptional regulator, LysR family
64XCV23552684884..2685381 [+], 49878036341  [UniProt]  [KEGG]conserved hypothetical protein
65XCV23562685446..2687278 [-], 183378036342  [UniProt]  [KEGG]conserved hypothetical protein
66XCV23572687592..2688218 [+], 62778036343  [UniProt]  [KEGG]conserved hypothetical proteinTA
67XCV23582688231..2688848 [+], 61878036344  [UniProt]  [KEGG]conserved hypothetical proteinTA
68XCV23592688948..2689310 [+], 36378036345  [UniProt]  [KEGG]putative membrane protein
69XCV23602689317..2690840 [-], 152478036346  [UniProt]  [KEGG]putative membrane protein
70XCV23612690855..2691226 [-], 37278036347  [UniProt]  [KEGG]putative membrane protein
71XCV23622691223..2692620 [-], 139878036348  [UniProt]  [KEGG]putative membrane protein
72XCV23632692630..2693577 [-], 94878036349  [UniProt]  [KEGG]putative secreted protein
73XCV23642693574..2694020 [-], 44778036350  [UniProt]  [KEGG]putative secreted protein
74XCV23652694183..2694677 [-], 49578036351  [UniProt]  [KEGG]RadC family DNA repair proteinVF
75XCV23662694859..2695644 [-], 78678036352  [UniProt]  [KEGG]putative membrane protein
76XCV23672695658..2698525 [-], 286878036353  [UniProt]  [KEGG]conserved hypothetical protein
77XCV23682698525..2698965 [-], 44178036354  [UniProt]  [KEGG]putative secreted protein
78XCV23692698946..2700376 [-], 143178036355  [UniProt]  [KEGG]putative secreted protein
79XCV23702700366..2701280 [-], 91578036356  [UniProt]  [KEGG]putative secreted protein
80XCV23712701277..2701969 [-], 69378036357  [UniProt]  [KEGG]putative secreted protein
81XCV23722701966..2702364 [-], 39978036358  [UniProt]  [KEGG]putative membrane protein
82XCV23732702377..2702733 [-], 35778036359  [UniProt]  [KEGG]putative membrane protein
83XCV23742702751..2702984 [-], 23478036360  [UniProt]  [KEGG]putative membrane protein
84XCV23752702981..2703361 [-], 38178036361  [UniProt]  [KEGG]putative secreted protein
85XCV23762703460..2704209 [-], 75078036362  [UniProt]  [KEGG]putative membrane protein
86XCV23772704206..2706398 [-], 219378036363  [UniProt]  [KEGG]putative membrane protein
87XCV23782706403..2706942 [-], 54078036364  [UniProt]  [KEGG]putative secreted protein
88XCV23792706939..2707529 [-], 59178036365  [UniProt]  [KEGG]putative lytic transglycosylase precursor
89XCV23802707511..2708236 [-], 72678036366  [UniProt]  [KEGG]putative secreted protein
90XCV23812708249..2708818 [-], 57078036367  [UniProt]  [KEGG]putative secreted protein
91XCV23822708872..2709471 [-], 60078036368  [UniProt]  [KEGG]putative secreted proteinVF
92XCV23832709660..2710748 [-], 108978036369  [UniProt]  [KEGG]hypothetical protein
93XCV23842710765..2712960 [-], 219678036370  [UniProt]  [KEGG]putative cytochrome precursor
94XCV23852713288..2713974 [-], 68778036371  [UniProt]  [KEGG]hypothetical protein
95XCV23862714086..2716365 [-], 228078036372  [UniProt]  [KEGG]putative helicase
96XCV23872716501..2716806 [-], 30678036373  [UniProt]  [KEGG]conserved hypothetical protein
97XCV23882716897..2717217 [-], 32178036374  [UniProt]  [KEGG]conserved hypothetical protein
98XCV23892717269..2718378 [-], 111078036375  [UniProt]  [KEGG]conserved hypothetical protein
99XCV23902718443..2719093 [-], 65178036376  [UniProt]  [KEGG]conserved hypothetical protein
100XCV23912719170..2719430 [-], 26178036377  [UniProt]  [KEGG]conserved hypothetical protein
101XCV23922719447..2719854 [-], 40878036378  [UniProt]  [KEGG]conserved hypothetical protein
102XCV23932719955..2720278 [-], 32478036379  [UniProt]  [KEGG]conserved hypothetical protein
103XCV23942720373..2721062 [-], 69078036380  [UniProt]  [KEGG]conserved hypothetical protein
104XCV23952721120..2722352 [-], 123378036381  [UniProt]  [KEGG]conserved hypothetical protein
105XCV23962722403..2722756 [-], 35478036382  [UniProt]  [KEGG]conserved hypothetical protein
106XCV23972722836..2723057 [-], 22278036383  [UniProt]  [KEGG]hypothetical protein
107XCV23982723054..2723866 [-], 81378036384  [UniProt]  [KEGG]conserved hypothetical protein
108XCV23992724149..2724427 [-], 27978036385  [UniProt]  [KEGG]conserved hypothetical protein
109XCV24002724525..2725262 [-], 73878036386  [UniProt]  [KEGG]conserved hypothetical protein
110XCV24012725342..2726028 [-], 68778036387  [UniProt]  [KEGG]conserved hypothetical protein
111XCV24022726174..2726566 [-], 39378036388  [UniProt]  [KEGG]conserved hypothetical protein
112XCV24032726588..2726974 [-], 38778036389  [UniProt]  [KEGG]conserved hypothetical protein
113XCV24042727132..2727884 [-], 75378036390  [UniProt]  [KEGG]conserved hypothetical protein
114XCV24052727933..2729549 [-], 161778036391  [UniProt]  [KEGG]DNA methyltransferase
115topB22730083..2732095 [-], 201378036392  [UniProt]  [KEGG]DNA topoisomerase III
116XCV24072732369..2732821 [-], 45378036393  [UniProt]  [KEGG]single-stranded DNA binding protein
117XCV24082732895..2733422 [-], 52878036394  [UniProt]  [KEGG]conserved hypothetical protein
118XCV24092733419..2734201 [-], 78378036395  [UniProt]  [KEGG]conserved hypothetical protein
119XCV24102734518..2735765 [-], 124878036396  [UniProt]  [KEGG]conserved hypothetical protein
120XCV24112735768..2736328 [-], 56178036397  [UniProt]  [KEGG]conserved hypothetical protein
121XCV24122736344..2737999 [-], 165678036398  [UniProt]  [KEGG]conserved hypothetical protein
122XCV24132737992..2738240 [-], 24978036399  [UniProt]  [KEGG]conserved hypothetical protein
123XCV24142738224..2739099 [-], 87678036400  [UniProt]  [KEGG]chromosome partitioning related protein
124XCV24152739142..2739354 [-], 21378036401  [UniProt]  [KEGG]putative regulatory protein, AlpA familyVF
125XCV24162739473..2740228 [-], 75678036402  [UniProt]  [KEGG]conserved hypothetical protein
126XCV24172741536..2742828 [+], 129378036403 UDP-glucose/GDP-mannose dehydrogenase
127XCV24182742812..2744074 [-], 126378036404 putative secreted protein
128fkpA2744085..2744528 [-], 44478036405 FKBP-type peptidyl-prolyl cis-trans isomerase
129XCV24202744576..2744941 [+], 36678036406 putative membrane protein
130XCV24212745041..2745787 [+], 74778036407 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins119Fasta
Identified as part of this study from AM039952