ICEberg
ICEberg ID51
NameICEXcaCa8004-1
FamilyICEclc
OrganismXanthomonas campestris pv. campestris str. 8004
Size (bp)98945
GC content [Genome] (%)60 [65]
Insertion sitetRNA-Gly(XC_4353)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000050 (complete ICE sequence in this genome)
Replicon chromosome (5148708 bp, Project:15) [NC_007086]
Genome coordinates2414505..2513449
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEXcaCa8004-1 form CP000050
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1XC_19982409643..2410107 [+], 46566573651 low molecular weight phosphotyrosine protein phosphatase
2XC_19992410050..2411549 [+], 150066573652 conserved hypothetical protein
3XC_20002411546..2413402 [+], 185766573653 excinuclease ABC subunit C
4XC_20012413402..2414307 [+], 90666573654 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
5XC_20022414668..2416605 [+], 193866573655  [UniProt]  [KEGG]phage-related integrase
6XC_20032417181..2417411 [+], 23166573656  [UniProt]  [KEGG]cointegrate resolution protein T
7XC_20042417876..2418871 [+], 99666573657  [UniProt]  [KEGG]avirulence protein
8XC_20052419392..2420078 [-], 68766573658  [UniProt]  [KEGG]conserved hypothetical protein
9XC_20072420596..2422110 [-], 151566573659  [UniProt]  [KEGG]IS1478 transposase
10XC_20092422887..2423021 [+], 13566573660  [UniProt]  [KEGG]conserved hypothetical protein
11XC_20102423107..2423379 [+], 27366573661  [UniProt]  [KEGG]IS1477 transposase
12XC_20112423412..2424245 [+], 83466573662  [UniProt]  [KEGG]IS1477 transposase
13XC_20122424383..2425363 [+], 98166573663  [UniProt]  [KEGG]IS1479 transposase
14XC_20142425925..2426644 [-], 72066573664  [UniProt]  [KEGG]conserved hypothetical protein
15XC_20132426585..2428192 [+], 160866573665  [UniProt]  [KEGG]sensor kinase
16XC_20152429088..2429861 [+], 77466573666  [UniProt]  [KEGG]conserved hypothetical protein
17XC_20162429893..2431035 [+], 114366573667  [UniProt]  [KEGG]VirB6 protein
18XC_20172431813..2432280 [+], 46866573668  [UniProt]  [KEGG]conserved hypothetical protein
19XC_20182432277..2432936 [+], 66066573669  [UniProt]  [KEGG]conserved hypothetical protein
20XC_20192432933..2434315 [+], 138366573670  [UniProt]  [KEGG]conserved hypothetical protein
21XC_20202435115..2437043 [-], 192966573671  [UniProt]  [KEGG]conserved hypothetical protein
22XC_20212437359..2437985 [+], 62766573672  [UniProt]  [KEGG]conserved hypothetical proteinTA
23XC_20222437998..2438630 [+], 63366573673  [UniProt]  [KEGG]conserved hypothetical proteinTA
24XC_20232438716..2439081 [+], 36666573674  [UniProt]  [KEGG]conserved hypothetical protein
25XC_20242439093..2440613 [-], 152166573675  [UniProt]  [KEGG]conserved hypothetical protein
26XC_20252440629..2440976 [-], 34866573676  [UniProt]  [KEGG]conserved hypothetical protein
27XC_20262440973..2442367 [-], 139566573677  [UniProt]  [KEGG]conserved hypothetical protein
28XC_20272442378..2443343 [-], 96666573678  [UniProt]  [KEGG]conserved hypothetical protein
29XC_20282443340..2443786 [-], 44766573679  [UniProt]  [KEGG]conserved hypothetical protein
30XC_20292443947..2444441 [-], 49566573680  [UniProt]  [KEGG]putative DNA repair protein RadCVF
31XC_20302444626..2445390 [-], 76566573681  [UniProt]  [KEGG]conserved hypothetical protein
32XC_20312445406..2448270 [-], 286566573682  [UniProt]  [KEGG]Type IV secretory pathway, VirB4 components
33XC_20322448270..2448713 [-], 44466573683  [UniProt]  [KEGG]conserved hypothetical protein
34XC_20332448694..2450124 [-], 143166573684  [UniProt]  [KEGG]conserved hypothetical protein
35XC_20342450114..2450965 [-], 85266573685  [UniProt]  [KEGG]conserved hypothetical protein
36XC_20352451037..2451726 [-], 69066573686  [UniProt]  [KEGG]conserved hypothetical protein
37XC_20362451723..2452133 [-], 41166573687  [UniProt]  [KEGG]conserved hypothetical protein
38XC_20372452144..2452461 [-], 31866573688  [UniProt]  [KEGG]conserved hypothetical protein
39XC_20382452750..2453130 [-], 38166573689  [UniProt]  [KEGG]conserved hypothetical protein
40XC_20392453229..2453978 [-], 75066573690  [UniProt]  [KEGG]conserved hypothetical protein
41XC_20402453975..2456164 [-], 219066573691  [UniProt]  [KEGG]VirD4, Type IV secretory pathway, VirD4 components
42XC_20412456169..2456717 [-], 54966573692  [UniProt]  [KEGG]conserved hypothetical protein
43XC_20422456714..2457295 [-], 58266573693  [UniProt]  [KEGG]conserved hypothetical protein
44XC_20432457301..2458023 [-], 72366573694  [UniProt]  [KEGG]conserved hypothetical protein
45XC_20442458039..2458686 [-], 64866573695  [UniProt]  [KEGG]conserved hypothetical protein
46XC_20452458683..2459267 [-], 58566573696  [UniProt]  [KEGG]conserved hypothetical proteinVF
47XC_20462459407..2461713 [-], 230766573697  [UniProt]  [KEGG]plasmid-related protein
48XC_20472461828..2462163 [-], 33666573698  [UniProt]  [KEGG]conserved hypothetical protein
49XC_20482462222..2462404 [-], 18366573699  [UniProt]  [KEGG]conserved hypothetical protein
50XC_20492462586..2463695 [-], 111066573700  [UniProt]  [KEGG]plasmid-related protein
51XC_20502463759..2464409 [-], 65166573701  [UniProt]  [KEGG]conserved hypothetical protein
52XC_20512464537..2464860 [-], 32466573702  [UniProt]  [KEGG]plasmid-related protein
53XC_20522464953..2465633 [-], 68166573703  [UniProt]  [KEGG]conserved hypothetical protein
54XC_20532465695..2466849 [-], 115566573704  [UniProt]  [KEGG]conserved hypothetical protein
55XC_20552467945..2468385 [+], 44166573705  [UniProt]  [KEGG]hypothetical protein
56XC_20562468544..2468897 [-], 35466573706  [UniProt]  [KEGG]conserved hypothetical protein
57XC_20572469041..2469481 [-], 44166573707  [UniProt]  [KEGG]conserved hypothetical protein
58XC_20582470152..2470358 [-], 20766573708  [UniProt]  [KEGG]conserved hypothetical protein
59XC_20592470580..2471506 [-], 92766573709  [UniProt]  [KEGG]conserved hypothetical protein
60XC_20602471506..2473626 [-], 212166573710  [UniProt]  [KEGG]conserved hypothetical protein
61XC_20612473868..2474260 [-], 39366573711  [UniProt]  [KEGG]conserved hypothetical protein
62XC_20622474458..2474685 [-], 22866573712  [UniProt]  [KEGG]conserved hypothetical protein
63XC_20632474967..2476505 [-], 153966573713  [UniProt]  [KEGG]DNA methyltransferase
64XC_20642477040..2479052 [-], 201366573714  [UniProt]  [KEGG]putative DNA topoisomerase III
65XC_20652479332..2479772 [-], 44166573715  [UniProt]  [KEGG]single-stranded DNA binding protein
66XC_20662479846..2480253 [-], 40866573716  [UniProt]  [KEGG]conserved hypothetical protein
67XC_20672480376..2481068 [-], 69366573717  [UniProt]  [KEGG]conserved hypothetical protein
68XC_20682481453..2482679 [-], 122766573718  [UniProt]  [KEGG]conserved hypothetical protein
69XC_20692482683..2483243 [-], 56166573719  [UniProt]  [KEGG]conserved hypothetical protein
70XC_20702483259..2484902 [-], 164466573720  [UniProt]  [KEGG]conserved hypothetical protein
71XC_20712485139..2486014 [-], 87666573721  [UniProt]  [KEGG]chromosome partitioning related protein
72XC_20722486061..2486282 [-], 22266573722  [UniProt]  [KEGG]phage-related proteinVF
73XC_20742487505..2488134 [+], 63066573723  [UniProt]  [KEGG]hypothetical protein
74XC_20752488076..2489314 [+], 123966573724  [UniProt]  [KEGG]transcriptional regulator, HTH_3 family
75XC_20782492116..2494215 [+], 210066573725  [UniProt]  [KEGG]YeeB-like protein
76XC_20792494208..2495389 [+], 118266573726  [UniProt]  [KEGG]YeeC-like protein
77XC_20802495476..2496441 [+], 96666573727  [UniProt]  [KEGG]conserved hypothetical protein
78XC_20812496680..2498017 [-], 133866573728  [UniProt]  [KEGG]avirulence protein
79XC_20822498108..2498422 [-], 31566573729  [UniProt]  [KEGG]avirulence protein
80XC_20842499638..2500534 [-], 89766573730  [UniProt]  [KEGG]Tn5041 transposase
81XC_20852501006..2502559 [-], 155466573731  [UniProt]  [KEGG]conserved hypothetical protein
82XC_20862502709..2509179 [-], 647166573732  [UniProt]  [KEGG]DNA helicase related protein
83XC_20872509788..2511518 [-], 173166573733  [UniProt]  [KEGG]tannase precursor
84XC_20882511641..2512087 [-], 44766573734  [UniProt]  [KEGG]conserved hypothetical protein
85XC_20892512750..2513025 [+], 27666573735  [UniProt]  [KEGG]conserved hypothetical protein
86XC_20902513765..2515177 [+], 141366573736 oxygen-independent coproporphyrinogen III oxidase
87XC_20912515416..2516708 [+], 129366573737 polysaccharide biosynthetic protein
88XC_20922516692..2517945 [-], 125466573738 conserved hypothetical protein
89XC_20932517957..2518355 [-], 39966573739 FKBP-type peptidyl-prolyl cis-trans isomerase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins81Fasta
Identified as part of this study from CP000050