ICEberg
ICEberg ID53
NameICEHaeULPAs1-1
FamilyICEclc
OrganismHerminiimonas arsenicoxydans
Size (bp)88118
GC content [Genome] (%)63 [54]
Insertion sitetRNA-Gly(HEARtRNA30)
FunctionArsenic resistance
Species that ICE can be transferred to-
Nucleotide SequenceCU207211 (complete ICE sequence in this genome)
Replicon chromosome (3424307 bp, Project:13467) [NC_009138]
Genome coordinates1978021..2066138
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEHaeULPAs1-1 form CU207211
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1HEAR19541974148..1974927 [+], 780193222353 Enoyl-CoA hydratase/isomerase
2HEAR19551974935..1975639 [+], 705133739056 Putative phosphoglycerate mutase
3HEAR19561975765..1976457 [+], 693193222354 Glutathione S-transferase
4HEAR19571976515..1976970 [-], 456193222355 putative acyl dehydratase
5HEAR19581976987..1977409 [-], 423133739059 Conserved hypothetical protein
6arsH31978021..1978743 [-], 723133739060  [UniProt]  [KEGG]NADPH-dependent FMN reductase, ArsH-like
7arsC3a1978736..1979158 [-], 423133739061  [UniProt]  [KEGG]arsenate reductase
8HEAR19611979155..1980387 [-], 1233133739062  [UniProt]  [KEGG]Putative permease of the major facilitator superfamily
9acr31980390..1981460 [-], 1071133739063  [UniProt]  [KEGG]Arsenite efflux pump ACR3
10arsC3b1981471..1981965 [-], 495133739064  [UniProt]  [KEGG]Arsenate reductase
11arsR31981970..1982293 [-], 324133739065  [UniProt]  [KEGG]Arsenical resistance transcriptional regulator, arsR
12HEAR19671983019..1983765 [+], 747133739066  [UniProt]  [KEGG]Conserved hypothetical protein
13HEAR19681983875..1984096 [+], 222193222356  [UniProt]  [KEGG]Putative prophage CP4-57 regulatory proteinVF
14HEAR19691984139..1985014 [+], 876133739068  [UniProt]  [KEGG]Conserved hypothetical protein
15HEAR19701984998..1985258 [+], 261193222357  [UniProt]  [KEGG]Conserved hypothetical protein
16HEAR19711985251..1986915 [+], 1665133739070  [UniProt]  [KEGG]Putative transcriptional regulator
17HEAR19721986931..1987491 [+], 561133739071  [UniProt]  [KEGG]Conserved hypothetical protein
18HEAR19731987495..1988745 [+], 1251133739072  [UniProt]  [KEGG]Conserved hypothetical protein
19HEAR19741989077..1989856 [+], 780133739073  [UniProt]  [KEGG]Conserved hypothetical protein
20HEAR19761989853..1990380 [+], 528pseudogene Putative integrase regulator R, partial
21HEAR19771990454..1990894 [+], 441133739075  [UniProt]  [KEGG]Putative single-stranded DNA binding protein
22topB1991174..1993195 [+], 2022193222358  [UniProt]  [KEGG]DNA topoisomerase 3 (DNA topoisomerase III)
23HEAR19801994118..1994330 [+], 213133739078  [UniProt]  [KEGG]Conserved hypothetical protein
24HEAR19821994352..1994744 [+], 393133739079  [UniProt]  [KEGG]Conserved hypothetical protein
25HEAR19831994959..1995696 [+], 738133739080  [UniProt]  [KEGG]Conserved hypothetical protein
26HEAR19851995793..1996071 [+], 279133739081  [UniProt]  [KEGG]Conserved hypothetical protein
27HEAR19861996192..1997346 [+], 1155133739082  [UniProt]  [KEGG]Conserved hypothetical protein
28HEAR19871997499..1998326 [+], 828133739083  [UniProt]  [KEGG]Conserved hypothetical proteinVF
29HEAR19881998422..1999111 [+], 690133739084  [UniProt]  [KEGG]Conserved hypothetical protein
30HEAR19891999206..1999547 [+], 342133739085  [UniProt]  [KEGG]Conserved hypothetical protein
31HEAR19901999652..2000059 [+], 408133739086  [UniProt]  [KEGG]Conserved hypothetical protein
32HEAR19912000076..2000336 [+], 261133739087  [UniProt]  [KEGG]Conserved hypothetical protein
33HEAR19922000413..2001063 [+], 651133739088  [UniProt]  [KEGG]Conserved hypothetical protein
34HEAR19932001128..2002237 [+], 1110133739089  [UniProt]  [KEGG]Conserved hypothetical protein
35HEAR19942002288..2002608 [+], 321133739090  [UniProt]  [KEGG]Conserved hypothetical protein
36HEAR19952002698..2003003 [+], 306133739091  [UniProt]  [KEGG]Conserved hypothetical protein
37HEAR19962003141..2005420 [+], 2280133739092  [UniProt]  [KEGG]Conserved hypothetical protein, putative helicase
38HEAR19972005559..2006338 [+], 780193222359 Conserved hypothetical protein, putative competence protein
39HEAR19982006405..2008171 [-], 1767133739093  [UniProt]  [KEGG]putative DNA helicase II
40HEAR19992008206..2009990 [-], 1785133739094  [UniProt]  [KEGG]Conserved hypothetical protein, putative ATP-dependent endonuclease
41HEAR20002010192..2010812 [+], 621133739095  [UniProt]  [KEGG]Conserved hypothetical proteinVF
42HEAR20012010809..2011459 [+], 651133739096  [UniProt]  [KEGG]Conserved hypothetical protein
43HEAR20022011474..2012199 [+], 726133739097  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
44HEAR20032012181..2012771 [+], 591133739098  [UniProt]  [KEGG]Conserved hypothetical protein, putative lytic transglycolase
45HEAR20042012768..2013316 [+], 549133739099  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
46HEAR20052013321..2015507 [+], 2187133739100  [UniProt]  [KEGG]Conserved hypothetical protein, putative ATPase domain
47HEAR20062015504..2016253 [+], 750133739101  [UniProt]  [KEGG]Conserved hypothetical protein; putative membrane protein
48HEAR20072016283..2018907 [-], 2625133739102  [UniProt]  [KEGG]Conserved hypothetical protein, putative ATPase involved in DNA repair
49HEAR20082019008..2020060 [-], 1053133739103  [UniProt]  [KEGG]Conserved hypothetical protein
50HEAR20102020212..2020886 [-], 675133739105  [UniProt]  [KEGG]Conserved hypothetical protein
51HEAR20112020949..2021893 [+], 945133739106  [UniProt]  [KEGG]Conserved hypothetical protein
52HEAR20122022030..2022410 [+], 381133739107  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
53HEAR20132022407..2022640 [+], 234133739108  [UniProt]  [KEGG]Conserved hypothetical protein; putative membrane protein
54HEAR20142022657..2023016 [+], 360133739109  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported or membrane protein
55HEAR20152023029..2023439 [+], 411133739110  [UniProt]  [KEGG]Conserved hypothetical protein; putative membrane protein
56HEAR20162023436..2024125 [+], 690133739111  [UniProt]  [KEGG]Conserved hypothetical protein
57HEAR20172024122..2025039 [+], 918133739112  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
58HEAR20182025029..2026459 [+], 1431133739113  [UniProt]  [KEGG]Conserved hypothetical protein
59HEAR20192026440..2026880 [+], 441133739114  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
60HEAR20202026880..2029762 [+], 2883193222360  [UniProt]  [KEGG]Conserved hypothetical protein
61HEAR20212029776..2030540 [+], 765133739116  [UniProt]  [KEGG]Conserved hypothetical protein, putative disulfide isomerase
62HEAR20222030725..2031219 [+], 495133739117  [UniProt]  [KEGG]putative DNA repair protein RadCVF
63HEAR20232031378..2031824 [+], 447133739118  [UniProt]  [KEGG]Conserved hypothetical protein
64HEAR20242031821..2032768 [+], 948133739119  [UniProt]  [KEGG]Conserved hypothetical protein
65HEAR20252032778..2034175 [+], 1398193222361  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
66HEAR20262034172..2034531 [+], 360133739121  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
67HEAR20272034547..2036064 [+], 1518133739122  [UniProt]  [KEGG]Conserved hypothetical protein; putative membrane protein
68HEAR20282036078..2036455 [-], 378133739123  [UniProt]  [KEGG]Conserved hypothetical protein; putative exported protein
69HEAR20292036483..2036941 [-], 459133739124  [UniProt]  [KEGG]Conserved hypothetical protein
70HEAR20302036941..2037258 [-], 318133739125  [UniProt]  [KEGG]Conserved hypothetical protein, putative transcriptional regulator
71HEAR20312037564..2039408 [+], 1845133739126  [UniProt]  [KEGG]Conserved hypothetical protein, putative relaxase
72uvrA12039488..2042139 [-], 2652133739127  [UniProt]  [KEGG]UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
73HEAR20332042165..2044030 [-], 1866133739128  [UniProt]  [KEGG]putative Na+/H+ antiporter fused with thioredoxin domain
74HEAR20342044085..2045398 [-], 1314133739129  [UniProt]  [KEGG]ATPase, AAA family protein
75HEAR20352045450..2046757 [-], 1308133739130  [UniProt]  [KEGG]NADH dehydrogenase
76frmB2046774..2047604 [-], 831133739131  [UniProt]  [KEGG]S-formylglutathione hydrolase
77HEAR20372047663..2048997 [-], 1335133739132  [UniProt]  [KEGG]Conserved hypothetical protein; putative membrane protein
78HEAR20382049180..2049578 [-], 399133739133  [UniProt]  [KEGG]Conserved hypothetical protein
79HEAR20392049622..2050731 [-], 1110133739134  [UniProt]  [KEGG]Alcohol dehydrogenase class-3 (Alcohol dehydrogenase class-III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH)
80frmR2050791..2051066 [-], 276133739135  [UniProt]  [KEGG]repressor FrmR
81HEAR20412051349..2052239 [-], 891133739136  [UniProt]  [KEGG]Putative nitrilase (nthA-like)
82HEAR20422052236..2052844 [-], 609133739137  [UniProt]  [KEGG]Conserved hypothetical protein, putative N-acetyltransferase
83HEAR20432052846..2053253 [-], 408133739138  [UniProt]  [KEGG]Conserved hypothetical protein
84HEAR20442053408..2054313 [+], 906133739139  [UniProt]  [KEGG]Putative transcriptional regulator, LysR family
85uvrB12054464..2056440 [-], 1977193222362  [UniProt]  [KEGG]UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
86HEAR20462056815..2057246 [-], 432133739141  [UniProt]  [KEGG]Conserved hypothetical protein
87HEAR20472057739..2058680 [+], 942133739142  [UniProt]  [KEGG]Putative transcription regulator, LysR family
88fdhA22059147..2060361 [+], 1215193222363  [UniProt]  [KEGG]Glutathione-independent formaldehyde dehydrogenase (FDH) (FALDH)
89HEAR20492060342..2060692 [+], 351133739144  [UniProt]  [KEGG]Hypothetical protein
90HEAR20502060865..2061755 [+], 891193222364  [UniProt]  [KEGG]putative transcriptional regulator, LysR family
91HEAR20522061939..2062844 [+], 906133739146  [UniProt]  [KEGG]Putative transcriptional regulator, LysR family
92HEAR20532062951..2063931 [+], 981133739147  [UniProt]  [KEGG]Conserved hypothetical protein, putative peroxidase
93int2063969..2065912 [-], 1944133739148  [UniProt]  [KEGG]Integrase
94pgsA2066278..2066865 [-], 588133739149 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase)
95uvrC12066934..2068790 [-], 1857133739150 UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C)
96nagZ2068832..2069905 [-], 1074133739151 Beta-hexosaminidase (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase)
97acpS2069902..2070294 [-], 393133739152 holo-[acyl-carrier-protein] synthase (CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase)
98pdxJ2070291..2071058 [-], 768133739153 Pyridoxine 5'-phosphate synthase (PNP synthase)
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins87Fasta
Identified as part of this study from CU207211