ICEberg
ICEberg
ICEberg ID55
NameICEAciJS42-1
FamilyICEclc
OrganismAcidovorax sp. JS42
Size (bp)119898
GC content [Genome] (%)65 [66]
Insertion sitetRNA-Gly(Ajs_R0015)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000539 (complete ICE sequence in this genome)
Replicon chromosome (4448856 bp, Project:15685) [NC_008782]
Genome coordinates1287924..1407821
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEAciJS42-1 form CP000539
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Ajs_12091283219..1283827 [+], 609120605701 ATP-dependent Clp protease proteolytic subunit ClpP
2Ajs_12101283925..1285190 [+], 1266120605702 ATP-dependent Clp protease, ATP-binding subunit ClpX
3Ajs_12111285330..1287750 [+], 2421120605703 ATP-dependent proteinase
4Ajs_12131288148..1289383 [+], 1236120605704  [UniProt]  [KEGG]phage integrase family protein
5Ajs_12141289444..1290976 [+], 1533120605705  [UniProt]  [KEGG]Integrase, catalytic region
6Ajs_12151290966..1291787 [+], 822120605706  [UniProt]  [KEGG]IstB domain protein ATP-binding protein
7Ajs_12161291835..1292470 [+], 636120605707  [UniProt]  [KEGG]IstB domain protein ATP-binding protein
8Ajs_12191294231..1295220 [+], 990120605708  [UniProt]  [KEGG]transcriptional regulator, AraC family with amidase-like domain
9Ajs_12201295245..1295880 [-], 636120605709  [UniProt]  [KEGG]transcriptional regulator, LysR family
10Ajs_12211296054..1296671 [+], 618120605710  [UniProt]  [KEGG]conserved hypothetical protein
11Ajs_12221296668..1298338 [+], 1671120605711  [UniProt]  [KEGG]Integrase, catalytic region
12Ajs_12231298335..1299231 [+], 897120605712  [UniProt]  [KEGG]TniB family protein
13Ajs_12241299303..1300721 [+], 1419120605713  [UniProt]  [KEGG]hypothetical protein
14Ajs_12251301445..1302671 [+], 1227120605714  [UniProt]  [KEGG]transposase IS116/IS110/IS902 family protein
15Ajs_12261302933..1304159 [+], 1227120605715  [UniProt]  [KEGG]transposase, IS204/IS1001/IS1096/IS1165 family protein
16Ajs_12291305583..1306485 [-], 903120605716  [UniProt]  [KEGG]transcriptional regulator, LysR family
17Ajs_12301306498..1307586 [-], 1089120605717  [UniProt]  [KEGG]transposase, IS4 family
18Ajs_12311307658..1307798 [-], 141120605718  [UniProt]  [KEGG]conserved hypothetical protein
19Ajs_12321308007..1311126 [-], 3120120605719  [UniProt]  [KEGG]heavy metal efflux pump, CzcA family
20Ajs_12341311369..1312349 [-], 981120605720  [UniProt]  [KEGG]copper resistance B precursor
21Ajs_12351312375..1314267 [-], 1893120605721  [UniProt]  [KEGG]copper-resistance protein, CopA family
22Ajs_12361314511..1315170 [+], 660120605722  [UniProt]  [KEGG]two component heavy metal response transcriptional regulator, winged helix familyVF
23Ajs_12381315520..1316680 [-], 1161120605723  [UniProt]  [KEGG]Integrase, catalytic region
24Ajs_12391316791..1317159 [+], 369120605724  [UniProt]  [KEGG]integrase, catalytic region
25Ajs_12401317323..1319257 [-], 1935120605725  [UniProt]  [KEGG]iron permease FTR1
26Ajs_12411319385..1319819 [-], 435120605726  [UniProt]  [KEGG]transcriptional regulator, MerR family
27Ajs_12421319914..1322313 [+], 2400120605727  [UniProt]  [KEGG]heavy metal translocating P-type ATPase
28Ajs_12431322310..1323404 [+], 1095120605728  [UniProt]  [KEGG]signal peptidase IIVF
29Ajs_12451323801..1325684 [-], 1884120605729  [UniProt]  [KEGG]Relaxase
30Ajs_12461325914..1326300 [+], 387120605730  [UniProt]  [KEGG]transcriptional regulator, AbrB familyTA
31Ajs_12471326300..1326758 [+], 459120605731  [UniProt]  [KEGG]conserved hypothetical proteinTA
32Ajs_12481326785..1327162 [+], 378120605732  [UniProt]  [KEGG]conserved hypothetical protein
33Ajs_12491327178..1328695 [-], 1518120605733  [UniProt]  [KEGG]conserved hypothetical protein
34Ajs_12501328710..1329069 [-], 360120605734  [UniProt]  [KEGG]conserved hypothetical protein
35Ajs_12511329066..1330460 [-], 1395120605735  [UniProt]  [KEGG]conserved hypothetical protein
36Ajs_12521330470..1331417 [-], 948120605736  [UniProt]  [KEGG]protein of unknown function DUF1527
37Ajs_12531331414..1331860 [-], 447120605737  [UniProt]  [KEGG]protein of unknown function DUF1525
38Ajs_12541332024..1332518 [-], 495120605738  [UniProt]  [KEGG]DNA repair protein RadCVF
39Ajs_12551332698..1333462 [-], 765120605739  [UniProt]  [KEGG]conserved hypothetical protein
40Ajs_12561333487..1336378 [-], 2892120605740  [UniProt]  [KEGG]conserved hypothetical protein
41Ajs_12571336378..1336827 [-], 450120605741  [UniProt]  [KEGG]putative secreted protein
42Ajs_12581336808..1338238 [-], 1431120605742  [UniProt]  [KEGG]putative secreted protein
43Ajs_12591338228..1339136 [-], 909120605743  [UniProt]  [KEGG]putative secreted protein
44Ajs_12601339133..1339825 [-], 693120605744  [UniProt]  [KEGG]putative secreted protein
45Ajs_12611339822..1340220 [-], 399120605745  [UniProt]  [KEGG]conserved hypothetical protein
46Ajs_12621340232..1340591 [-], 360120605746  [UniProt]  [KEGG]conserved hypothetical protein
47Ajs_12631340608..1340841 [-], 234120605747  [UniProt]  [KEGG]conserved hypothetical protein
48Ajs_12641340838..1341221 [-], 384120605748  [UniProt]  [KEGG]plasmid conserved hypothetical protein, RAQPRD
49Ajs_12651341425..1341895 [+], 471120605749  [UniProt]  [KEGG]DNA binding domain, excisionase familyTA
50Ajs_12661341892..1342467 [+], 576120605750  [UniProt]  [KEGG]conserved hypothetical proteinTA
51Ajs_12671342485..1343399 [+], 915120605751  [UniProt]  [KEGG]AAA ATPase, central domain protein
52Ajs_12681343396..1343866 [+], 471120605752  [UniProt]  [KEGG]conserved hypothetical protein
53Ajs_12691343863..1344363 [+], 501120605753  [UniProt]  [KEGG]conserved hypothetical protein
54Ajs_12701344363..1345265 [+], 903120605754  [UniProt]  [KEGG]conserved hypothetical protein
55Ajs_12711345304..1346029 [+], 726120605755  [UniProt]  [KEGG]conserved hypothetical protein
56Ajs_12721346039..1348663 [+], 2625120605756  [UniProt]  [KEGG]conserved hypothetical protein
57Ajs_12731348704..1349453 [-], 750120605757  [UniProt]  [KEGG]conserved hypothetical protein
58Ajs_12741349450..1351642 [-], 2193120605758  [UniProt]  [KEGG]conserved hypothetical protein
59Ajs_12751351647..1352195 [-], 549120605759  [UniProt]  [KEGG]putative secreted protein
60Ajs_12761352192..1352782 [-], 591120605760  [UniProt]  [KEGG]Lytic transglycosylase, catalytic
61Ajs_12771352764..1353489 [-], 726120605761  [UniProt]  [KEGG]putative secreted protein
62Ajs_12781353506..1354141 [-], 636120605762  [UniProt]  [KEGG]conserved hypothetical protein
63Ajs_12791354138..1354704 [-], 567120605763  [UniProt]  [KEGG]putative secreted proteinVF
64Ajs_12801354831..1355193 [+], 363120605764  [UniProt]  [KEGG]transcriptional regulator, ArsR family
65Ajs_12811355196..1355690 [+], 495120605765  [UniProt]  [KEGG]protein tyrosine phosphatase
66Ajs_12821355701..1356777 [+], 1077120605766  [UniProt]  [KEGG]arsenical-resistance protein
67Ajs_12831356794..1357216 [+], 423120605767  [UniProt]  [KEGG]arsenate reductase
68Ajs_12841357200..1357931 [+], 732120605768  [UniProt]  [KEGG]NADPH-dependent FMN reductase
69Ajs_12851357990..1360269 [-], 2280120605769  [UniProt]  [KEGG]helicase domain protein
70Ajs_12861360406..1360711 [-], 306120605770  [UniProt]  [KEGG]conserved hypothetical protein
71Ajs_12871360801..1361121 [-], 321120605771  [UniProt]  [KEGG]conserved hypothetical protein
72Ajs_12881361173..1362321 [-], 1149120605772  [UniProt]  [KEGG]conserved hypothetical protein
73Ajs_12891362347..1362994 [-], 648120605773  [UniProt]  [KEGG]conserved hypothetical protein
74Ajs_12901363071..1363331 [-], 261120605774  [UniProt]  [KEGG]conserved hypothetical protein
75Ajs_12911363348..1363755 [-], 408120605775  [UniProt]  [KEGG]conserved hypothetical protein
76Ajs_12921363856..1364179 [-], 324120605776  [UniProt]  [KEGG]conserved hypothetical protein
77Ajs_12931364272..1364961 [-], 690120605777  [UniProt]  [KEGG]conserved hypothetical protein
78Ajs_12941365018..1365947 [-], 930120605778  [UniProt]  [KEGG]conserved hypothetical protein
79Ajs_12961366850..1367110 [-], 261120605779  [UniProt]  [KEGG]conserved hypothetical protein
80Ajs_12981368196..1369884 [-], 1689120605780  [UniProt]  [KEGG]mercuric reductase
81Ajs_12991369895..1370182 [-], 288120605781  [UniProt]  [KEGG]mercuric transport protein periplasmic component
82Ajs_13001370195..1370545 [-], 351120605782  [UniProt]  [KEGG]Mercuric transport protein MerT
83Ajs_13011370617..1371024 [+], 408120605783  [UniProt]  [KEGG]putative transcriptional regulator, MerR family
84Ajs_13021371286..1372110 [-], 825120605784  [UniProt]  [KEGG]conserved hypothetical protein
85Ajs_13031372399..1372677 [-], 279120605785  [UniProt]  [KEGG]conserved hypothetical protein
86Ajs_13041372775..1373512 [-], 738120605786  [UniProt]  [KEGG]conserved hypothetical protein
87Ajs_13051373596..1374282 [-], 687120605787  [UniProt]  [KEGG]conserved hypothetical protein
88Ajs_13061374465..1374857 [-], 393120605788  [UniProt]  [KEGG]conserved hypothetical protein
89Ajs_13081375434..1376192 [-], 759120605789  [UniProt]  [KEGG]conserved hypothetical protein
90Ajs_13091376235..1377854 [-], 1620120605790  [UniProt]  [KEGG]C-5 cytosine-specific DNA methylase
91Ajs_13111378380..1380392 [-], 2013120605791  [UniProt]  [KEGG]DNA topoisomerase III
92Ajs_13121380669..1381121 [-], 453120605792  [UniProt]  [KEGG]single-strand binding protein/Primosomal replication protein n
93Ajs_13131381195..1381722 [-], 528120605793  [UniProt]  [KEGG]putative integrase regulator R protein
94Ajs_13141381719..1382513 [-], 795120605794  [UniProt]  [KEGG]conserved hypothetical protein
95Ajs_13151382944..1384179 [-], 1236120605795  [UniProt]  [KEGG]conserved hypothetical protein
96Ajs_13161384182..1384742 [-], 561120605796  [UniProt]  [KEGG]conserved hypothetical protein
97Ajs_13171384757..1386436 [-], 1680120605797  [UniProt]  [KEGG]conserved hypothetical protein
98Ajs_13181386429..1386698 [-], 270120605798  [UniProt]  [KEGG]conserved hypothetical protein
99Ajs_13191386682..1387557 [-], 876120605799  [UniProt]  [KEGG]Cobyrinic acid a,c-diamide synthase
100Ajs_13201387600..1387812 [-], 213120605800  [UniProt]  [KEGG]phage transcriptional regulator, AlpAVF
101Ajs_13211387931..1388677 [-], 747120605801  [UniProt]  [KEGG]conserved hypothetical protein
102Ajs_13221389128..1389628 [+], 501120605802  [UniProt]  [KEGG]protein of unknown function DUF305
103Ajs_13231389767..1392736 [+], 2970120605803  [UniProt]  [KEGG]transposase Tn3 family protein
104Ajs_13241392822..1393073 [+], 252120605804  [UniProt]  [KEGG]putative transcriptional regulator, CopG/Arc/MetJ family
105Ajs_13261393644..1393961 [-], 318120605805  [UniProt]  [KEGG]protein of unknown function UPF0060
106Ajs_13271393966..1394502 [-], 537120605806  [UniProt]  [KEGG]hypothetical protein
107Ajs_13281394508..1394894 [-], 387120605807  [UniProt]  [KEGG]conserved hypothetical protein
108Ajs_13291394934..1398053 [-], 3120120605808  [UniProt]  [KEGG]heavy metal efflux pump, CzcA family
109Ajs_13301398055..1399173 [-], 1119120605809  [UniProt]  [KEGG]conserved hypothetical protein
110Ajs_13311399170..1399730 [-], 561120605810  [UniProt]  [KEGG]conserved hypothetical protein
111Ajs_13321399789..1401114 [-], 1326120605811  [UniProt]  [KEGG]outer membrane efflux protein
112Ajs_13331401279..1401641 [-], 363120605812  [UniProt]  [KEGG]conserved hypothetical protein
113Ajs_13341401705..1402415 [-], 711120605813  [UniProt]  [KEGG]conserved hypothetical protein
114Ajs_13351402423..1404684 [-], 2262120605814  [UniProt]  [KEGG]heavy metal translocating P-type ATPase
115Ajs_13361404762..1405202 [+], 441120605815  [UniProt]  [KEGG]putative transcriptional regulator, MerR family
116Ajs_13371405501..1407198 [+], 1698120605816  [UniProt]  [KEGG]phage integrase family protein
117Ajs_13381407237..1407821 [+], 585120605817  [UniProt]  [KEGG]conserved hypothetical protein
118Ajs_13401408940..1410403 [+], 1464120605818 phage integrase family protein
119Ajs_13411410398..1411162 [-], 765120605819 IstB domain protein ATP-binding protein
120Ajs_13421411159..1412754 [-], 1596120605820 Integrase, catalytic region
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins114Fasta
Identified as part of this study from CP000539