ICEberg
ICEberg ID56
NameICEclc(B13)
FamilyICEclc
OrganismPseudomonas knackmussii B13
Size (bp)102766
GC content [Genome] (%)62.5
Insertion sitetRNA-Gly
Function3-chlorobenzoic acid degradation
Species that ICE can be transferred toPseudomonas putida; Pseudomonas aeruginosa; Cupriavidus necator
Nucleotide SequenceAJ617740 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates60..102843
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
 

The gene information of ICEclc(B13) is not available.
ElementNo. of sequencesDownload
Nucleotide sequencesFasta
ProteinsFasta
(1) Miyazaki R; Minoia M; Pradervand N; Sulser S; Reinhard F; van der Meer JR (2012). Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element. PLoS Genet. 8(7):e1002818. [PudMed:22807690] experimental
(2) Miyazaki R; van der Meer JR (2011). How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element. Mob Genet Elements. 1(1):82-84. [PudMed:22016851]
(3) Miyazaki R; van der Meer JR (2011). A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13. Mol Microbiol. 79(3):743-58. [PudMed:21255116] experimental
(4) Gaillard M; Pradervand N; Minoia M; Sentchilo V; Johnson DR; van der Meer JR (2010). Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13. BMC Microbiol. 10:153. [PudMed:20504315] experimental
(5) Sentchilo V; Czechowska K; Pradervand N; Minoia M; Miyazaki R; van der Meer JR (2009). Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol. 72(5):1293-306. [PudMed:19432799] experimental
(6) Gaillard M; Pernet N; Vogne C; Hagenbuchle O; van der Meer JR (2008). Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc Natl Acad Sci U S A. 105(19):7058-63. [PudMed:18448680] experimental
(7) Gaillard M; Vallaeys T; Vorholter FJ; Minoia M; Werlen C; Sentchilo V; Puhler A; van der Meer JR (2006). The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. J Bacteriol. 188(5):1999-2013. [PudMed:16484212] experimental
(8) She Q; Shen B; Chen L (2004). Archaeal integrases and mechanisms of gene capture. Biochem Soc Trans. 32(Pt 2):222-6. [PudMed:15046576]
(9) Sentchilo V; Zehnder AJ; van der Meer JR (2003). Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13. Mol Microbiol. 49(1):93-104. [PudMed:12823813] experimental
(10) Ravatn R; Studer S; Zehnder AJ; van der Meer JR (1998). Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13. J Bacteriol. 180(21):5505-14. [PudMed:9791097] experimental
 
experimental experimental literature