ICEberg
ICEberg ID57
NameICEclc(JS705)
FamilyICEclc
OrganismRalstonia sp. JS705
Size (bp)-
GC content [Genome] (%)-
Insertion sitetRNA-Gly
FunctionChlorobenzene degradative pathway
Species that ICE can be transferred toPseudomonas putida; Pseudomonas aeruginosa; Cupriavidus necator
Nucleotide SequenceAJ006307 (partical ICE sequence)
experimental This is a ICE derived from experimental literature.
Incomplete gene list of ICEclc(JS705) from AJ006307
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1clcR687..1571 [-], 8853184041  [UniProt] ClcR
2clcA1741..2523 [+], 7833297924  [UniProt] chlorocatechol 1,2-dioxygenase
3mcbF3036..3866 [+], 8313184043  [UniProt] 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
4mcbAa3960..5315 [+], 13563184044  [UniProt] terminal oxygenase large subunit
5mcbAb5426..5989 [+], 5643184045  [UniProt] terminal oxygenase small subunit
6mcbAc6000..6323 [+], 3243184046  [UniProt] ferredoxin
7mcbAd6323..7555 [+], 12333184047  [UniProt] reductase
8mcbB7552..8379 [+], 82827802969  [UniProt] cis-chlorobenzene dihydrodiol dehydrogenase
9tnpA8574..9818 [+], 124527802970  [UniProt] transposase
10clcR12271..12483 [-], 21327802971  [UniProt] transcriptional activator
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins10Fasta
(1) Sentchilo V; Czechowska K; Pradervand N; Minoia M; Miyazaki R; van der Meer JR (2009). Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol. 72(5):1293-306. [PudMed:19432799] experimental
(2) Muller TA; Werlen C; Spain J; Van Der Meer JR (2003). Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environ Microbiol. 5(3):163-73. [PudMed:12588296] experimental
 
experimental experimental literature