ICEberg
ICEberg
ICEberg ID58
NameICEBfrYCH46-1
FamilyCTnDOT/ERL
OrganismBacteroides fragilis YCH46
Size (bp)49170
GC content [Genome] (%)50 [43]
Insertion siteGTAACTTTGC
FunctionTetracycline resistance
Species that ICE can be transferred toBacteroides fragilis
Nucleotide SequenceAP006841 (complete ICE sequence in this genome)
Replicon chromosome (5277274 bp, Project:13067) [NC_006347]
Genome coordinates114653..163822
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEBfrYCH46-1 form AP006841
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1BF0100110201..112078 [-], 187852214256 glucose-inhibited division protein A
2BF0101112576..112800 [-], 22552214257 hypothetical protein
3BF0102112815..114503 [+], 168952214258 conserved hypothetical protein
4BF0103114772..114993 [-], 22252214259  [UniProt]  [KEGG]hypothetical protein
5BF0104115091..115501 [+], 41152214260  [UniProt]  [KEGG]hypothetical protein
6BF0105115716..116111 [+], 39652214261  [UniProt]  [KEGG]conserved hypothetical protein
7BF0106116125..116541 [+], 41752214262  [UniProt]  [KEGG]hypothetical protein
8BF0107116538..117869 [+], 133252214263  [UniProt]  [KEGG]hypothetical protein
9BF0108117894..118151 [+], 25852214264  [UniProt]  [KEGG]conserved hypothetical protein
10BF0109118320..118646 [+], 32752214265  [UniProt]  [KEGG]hypothetical protein
11BF0110118589..119008 [+], 42052214266  [UniProt]  [KEGG]hypothetical protein
12BF0111119042..119287 [-], 24652214267  [UniProt]  [KEGG]hypothetical protein
13BF0112119496..120020 [-], 52552214268  [UniProt]  [KEGG]probable lysozyme
14BF0113120020..120523 [-], 50452214269  [UniProt]  [KEGG]TraQ
15BF0114120520..121422 [-], 90352214270  [UniProt]  [KEGG]TraP
16BF0115121430..122005 [-], 57652214271  [UniProt]  [KEGG]TraO
17BF0116122008..122994 [-], 98752214272  [UniProt]  [KEGG]TraN
18BF0117123029..124381 [-], 135352214273  [UniProt]  [KEGG]TraM
19BF0118124362..124670 [-], 30952214274  [UniProt]  [KEGG]TraL
20BF0119124677..125300 [-], 62452214275  [UniProt]  [KEGG]TraK
21BF0120125332..126336 [-], 100552214276  [UniProt]  [KEGG]TraJ
22BF0121126340..126969 [-], 63052214277  [UniProt]  [KEGG]TraI
23BF0122126993..127373 [-], 38152214278  [UniProt]  [KEGG]TraH
24BF0123127414..129918 [-], 250552214279  [UniProt]  [KEGG]TraG
25BF0124129915..130247 [-], 33352214280  [UniProt]  [KEGG]TraF
26BF0125130258..130575 [-], 31852214281  [UniProt]  [KEGG]TraE
27BF0126130777..131487 [-], 71152214282  [UniProt]  [KEGG]TraD
28BF0127131522..131875 [-], 35452214283  [UniProt]  [KEGG]TraB
29BF0128131878..132318 [-], 44152214284  [UniProt]  [KEGG]conserved protein found in conjugate transposon
30BF0129132321..133370 [-], 105052214285  [UniProt]  [KEGG]TraA
31BF0130133355..133522 [+], 16852214286  [UniProt]  [KEGG]hypothetical protein
32BF0131133792..134220 [+], 42952214287  [UniProt]  [KEGG]conserved hypothetical protein
33BF0132134199..135446 [+], 124852214288  [UniProt]  [KEGG]conserved hypothetical protein
34BF0133135477..137495 [+], 201952214289  [UniProt]  [KEGG]putative mobilization protein
35BF0134137627..140881 [-], 325552214290  [UniProt]  [KEGG]hypothetical protein
36BF0135140898..142028 [-], 113152214291  [UniProt]  [KEGG]conserved hypothetical protein
37BF0136142330..142935 [-], 60652214292  [UniProt]  [KEGG]tetracycline resistance element mobilization regulatory protein RteC
38BF0137143174..143596 [-], 42352214293  [UniProt]  [KEGG]hypothetical protein
39BF0138143876..145198 [-], 132352214294  [UniProt]  [KEGG]rteB gene product
40BF0139145191..146039 [-], 84952214295 truncated tetracycline resistance element regulator RteA
41BF0140146009..147508 [-], 150052214296 truncated tetracycline resistance element regulator RteA
42BF0141147508..149481 [-], 197452214297  [UniProt]  [KEGG]tetracycline resistant protein TetQAR
43BF0142150091..155907 [-], 581752214298  [UniProt]  [KEGG]putative DNA methylase
44BF0143155897..156484 [-], 58852214299  [UniProt]  [KEGG]conserved hypothetical protein
45BF0144156512..158599 [-], 208852214300  [UniProt]  [KEGG]Exc protein
46BF0145158660..160231 [-], 157252214301  [UniProt]  [KEGG]conserved hypothetical protein
47BF0146160252..160602 [-], 35152214302  [UniProt]  [KEGG]conserved hypothetical protein
48BF0147160606..161031 [-], 42652214303  [UniProt]  [KEGG]conserved hypothetical protein
49BF0148160967..161164 [+], 19852214304  [UniProt]  [KEGG]conserved hypothetical protein
50BF0149161128..161469 [+], 34252214305  [UniProt]  [KEGG]conserved hypothetical protein
51BF0150161501..161806 [+], 30652214306  [UniProt]  [KEGG]conserved hypothetical protein
52BF0151161884..162246 [-], 36352214307  [UniProt]  [KEGG]conserved hypothetical protein
53BF0152162258..163493 [-], 123652214308  [UniProt]  [KEGG]tyrosine type site-specific recombinase
54BF0153163848..164198 [+], 35152214309 hypothetical protein
55BF0154164234..165457 [+], 122452214310 putative pyrogenic exotoxin B
56BF0155165475..165855 [+], 38152214311 conserved hypothetical protein
57BF0156166147..166566 [-], 42052214312 conserved hypothetical protein
58BF0157166871..167053 [+], 18352214313 hypothetical protein
59BF0158167016..167441 [+], 42652214314 hypothetical protein
60BF0159167606..168487 [+], 88252214315 conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
regulation Gene may play role in regulation of transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
Identified as part of this study from AP006841