ICEberg
ICEberg ID61
NameICEHin86-28NP
FamilyICEHin1056
OrganismHaemophilus influenzae 86-028NP
Size (bp)56108
GC content [Genome] (%)39 [38]
Insertion sitetRNA-Leu(NTHIT0004)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000057 (complete ICE sequence in this genome)
Replicon chromosome (1914490 bp, Project:11752) [NC_007146]
Genome coordinates92259..148366
Link to view genome context of this ICE in the genome browser
in_silico This is a putative ICE identified in this study by Blast.
Complete gene list of ICEHin86-28NP form CP000057
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1NTHI009587739..88527 [+], 78968056830 putative deoxyribonuclease
2NTHI009688589..88846 [+], 25868056831 hypothetical protein
3NTHI009788857..89132 [+], 27668056832 hypothetical protein
4trxA89182..89505 [-], 32468056833 thioredoxin
5ddh89625..90620 [-], 99668056834 2-hydroxyacid dehydrogenase homolog
6metB90633..91778 [-], 114668056835 cystathionine gamma-synthase
7NTHI010192334..93170 [+], 83768056836  [UniProt]  [KEGG]predicted ATPase involved in chromosome partitioning
8dnaB293172..94527 [+], 135668056837  [UniProt]  [KEGG]replicative DNA helicase
9NTHI010394520..96220 [+], 170168056838  [UniProt]  [KEGG]conserved hypothetical protein
10NTHI010496220..96771 [+], 55268056839  [UniProt]  [KEGG]conserved hypothetical protein
11NTHI010696921..98144 [+], 122468056840  [UniProt]  [KEGG]conserved hypothetical protein
12NTHI010798441..99196 [+], 75668056841  [UniProt]  [KEGG]conserved hypothetical protein
13NTHI010899196..99684 [+], 48968056842  [UniProt]  [KEGG]conserved hypothetical protein
14ssb299930..100352 [+], 42368056843  [UniProt]  [KEGG]Single-strand binding proteinVF
15NTHI0110100379..100897 [+], 51968056844  [UniProt]  [KEGG]conserved putative lipoprotein
16NTHI0111101113..101670 [-], 55868056845  [UniProt]  [KEGG]conserved hypothetical protein
17topB2101746..103806 [+], 206168056846  [UniProt]  [KEGG]DNA topoisomerase III
18NTHI0113104691..105119 [+], 42968056847  [UniProt]  [KEGG]conserved hypothetical protein
19NTHI0114105131..105223 [+], 9368056848  [UniProt]  [KEGG]hypothetical protein
20NTHI0115105234..105875 [+], 64268056849  [UniProt]  [KEGG]conserved hypothetical protein
21NTHI0116105910..106317 [+], 40868056850  [UniProt]  [KEGG]hypothetical protein
22radC2106418..106888 [+], 47168056851  [UniProt]  [KEGG]putative DNA repair radC-like proteinVF
23NTHI0118106981..107577 [+], 59768056852  [UniProt]  [KEGG]conserved hypothetical protein
24NTHI0119107635..108399 [+], 76568056853  [UniProt]  [KEGG]conserved hypothetical protein
25pilL108498..109127 [+], 63068056854  [UniProt]  [KEGG]conserved putative lipoprotein
26NTHI0121109131..109871 [+], 74168056855  [UniProt]  [KEGG]conserved putative exported protein
27NTHI0122109850..110608 [+], 75968056856  [UniProt]  [KEGG]conserved putative exported protein
28NTHI0123110624..111130 [+], 50768056857  [UniProt]  [KEGG]conserved putative exported protein
29NTHI0125111127..113376 [+], 225068056858  [UniProt]  [KEGG]conserved hypothetical protein
30NTHI0126113695..114381 [+], 68768056859  [UniProt]  [KEGG]conserved putative membrane protein
31NTHI0127114512..114862 [+], 35168056860  [UniProt]  [KEGG]conserved putative exported protein
32NTHI0128115131..115532 [+], 40268056861  [UniProt]  [KEGG]conserved putative membrane protein
33NTHI0129115552..115923 [+], 37268056862  [UniProt]  [KEGG]conserved putative membrane protein
34NTHI0130115935..116579 [+], 64568056863  [UniProt]  [KEGG]conserved putative exported protein
35NTHI0131116579..117448 [+], 87068056864  [UniProt]  [KEGG]conserved hypothetical protein
36NTHI0132117459..118859 [+], 140168056865  [UniProt]  [KEGG]conserved putative exported protein
37NTHI0133118869..119276 [+], 40868056866  [UniProt]  [KEGG]conserved putative lipoprotein
38NTHI0134119292..122162 [+], 287168056867  [UniProt]  [KEGG]conserved hypothetical protein
39NTHI0135122170..122577 [+], 40868056868  [UniProt]  [KEGG]conserved hypothetical protein
40NTHI0136122587..122910 [+], 32468056869  [UniProt]  [KEGG]conserved hypothetical membrane protein
41NTHI0137122919..124412 [+], 149468056870  [UniProt]  [KEGG]conserved putative membrane protein
42NTHI0139124468..124797 [-], 33068056871  [UniProt]  [KEGG]conserved hypothetical membrane protein
43tnpA124955..127960 [-], 300668056872  [UniProt]  [KEGG]transposon Tn3 transposase
44NTHI0140126925..127041 [+], 11768056873  [UniProt]  [KEGG]hypothetical protein
45tnpR128088..128681 [+], 594156617158  [UniProt]  [KEGG]transposon Tn3 resolvase
46NTHI2055128729..129589 [+], 861156617159  [UniProt]  [KEGG]beta-lactamase TEM precursorAR
47NTHI0143129813..129992 [+], 18068056875  [UniProt]  [KEGG]hypothetical protein
48NTHI0144130037..130444 [-], 40868056876  [UniProt]  [KEGG]hypothetical exported protein
49NTHI0145130460..132460 [-], 200168056877  [UniProt]  [KEGG]conserved putative exported protein
50NTHI0146132475..133416 [-], 94268056878  [UniProt]  [KEGG]conserved putative exported protein
51NTHI0147133413..133856 [-], 44468056879  [UniProt]  [KEGG]conserved hypothetical protein
52NTHI0148134168..134587 [+], 42068056880  [UniProt]  [KEGG]conserved hypothetical membrane protein
53NTHI0149134672..134905 [+], 23468056881  [UniProt]  [KEGG]conserved hypothetical protein
54NTHI0150134908..135156 [+], 24968056882  [UniProt]  [KEGG]hypothetical protein
55NTHI0151135160..135318 [+], 15968056883  [UniProt]  [KEGG]hypothetical protein
56traC135449..136402 [+], 95468056884  [UniProt]  [KEGG]conserved putative antirestriction protein
57NTHI0153136506..137267 [+], 76268056885  [UniProt]  [KEGG]possible type I restriction enzyme M subunit
58NTHI0154137493..138059 [+], 56768056886  [UniProt]  [KEGG]hypothetical protein
59NTHI0155138099..138473 [+], 37568056887  [UniProt]  [KEGG]conserved hypothetical protein
60NTHI0156138463..139140 [+], 67868056888  [UniProt]  [KEGG]conserved hypothetical protein
61NTHI0157139118..139735 [+], 61868056889  [UniProt]  [KEGG]conserved hypothetical protein
62NTHI0158139999..140598 [-], 60068056890  [UniProt]  [KEGG]resolvase/integrase-like protein
63NTHI0159140613..140804 [-], 19268056891  [UniProt]  [KEGG]hypothetical protein
64NTHI0160141273..141527 [-], 25568056892  [UniProt]  [KEGG]hypothetical protein
65NTHI0161142718..143431 [+], 71468056893  [UniProt]  [KEGG]conserved hypothetical protein
66NTHI0162144151..145404 [+], 125468056894  [UniProt]  [KEGG]hypothetical protein
67NTHI0163145547..147463 [+], 191768056895  [UniProt]  [KEGG]conserved hypothetical protein
68NTHI0164147524..148366 [+], 84368056896  [UniProt]  [KEGG]putative site-specific recombinase
69thrC149016..150293 [-], 127868056897 threonine synthase
70thrB150336..151280 [-], 94568056898 homoserine kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins62Fasta
(1) Juhas M; Power PM; Harding RM; Ferguson DJ; Dimopoulou ID; Elamin AR; Mohd-Zain Z; Hood DW; Adegbola R; Erwin A; Smith A; Munson RS; Harrison A; Mansfield L; Bentley S; Crook DW (2007). Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biol. 8(11):R237. [PudMed:17996041] in_silico
(2) Harrison A; Dyer DW; Gillaspy A; Ray WC; Mungur R; Carson MB; Zhong H; Gipson J; Gipson M; Johnson LS; Lewis L; Bakaletz LO; Munson RS Jr (2005). Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20. J Bacteriol. 187(13):4627-36. [PudMed:15968074]
(3) Identified as part of this study from CP000057
 
in_silico in silico analysis literature