ICEberg
ICEberg ID66
NameCTnscr94
FamilyUnclassified
OrganismSalmonella enterica subsp. enterica serovar Senftenberg, strain 5494-57
Size (bp)>126312
GC content [Genome] (%)54.6
Insertion sitetRNA-Phe
FunctionA sucrose metabolic pathway
Species that ICE can be transferred toEscherichia coli
Nucleotide SequenceFN298496 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates11966..126312
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of CTnscr94 form FN298496
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1CTnscr_1087932..8864 [+], 933327413054 putative leader peptidase
2CTnscr_1078930..9340 [+], 411327413055 putative lipoprotein
3CTnscr_1069487..10353 [+], 867327413056 putative general secretion pathway protein
4CTnscr_10510386..11279 [+], 894327413057 putative general secretion pathway protein L
5CTnscr_10411281..11817 [+], 537327413058 putative general secretion pathway protein M
6CTnscr_10312140..13117 [+], 978327413059  [UniProt] conserved hypothetical protein
7CTnscr_102a13130..13363 [+], 234327413060  [UniProt] hypothetical protein
8dnaB13356..14708 [+], 1353327413061  [UniProt] replicative dna helicase
9CTnscr_10114708..16426 [+], 1719327413062  [UniProt] conserved hypothetical protein
10traR16410..16667 [+], 258327413063  [UniProt] putative zinc finger protein
11CTnscr_10016660..17406 [+], 747327413064  [UniProt] conserved hypothetical protein
12CTnscr_09917494..18093 [+], 600327413065  [UniProt] conserved hypothetical protein
13CTnscr_09818093..18329 [+], 237327413066  [UniProt] conserved hypothetical protein
14CTnscr_09718412..19635 [+], 1224327413067  [UniProt] conserved hypothetical protein
15CTnscr_09619648..20250 [+], 603327413068  [UniProt] hypothetical protein
16CTnscr_09520329..21057 [+], 729327413069  [UniProt] conserved hypothetical protein
17topB21076..23091 [+], 2016327413070  [UniProt] DNA topoisomerase
18CTnscr_09323751..24248 [+], 498327413071  [UniProt] conserved hypothetical protein
19-24321..24524 [+], 204327413072  [UniProt] conserved hypothetical protein
20ssB24542..25081 [+], 540327413073  [UniProt] single-stranded dna-binding proteinVF
21CTnscr_09125183..25614 [+], 432327413074  [UniProt] conserved hypothetical protein
22-25788..25970 [+], 183327413075  [UniProt] hypothetical protein
23CTnscr_09026036..26275 [+], 240327413076  [UniProt] conserved hypothetical protein
24-26359..26556 [+], 198327413077  [UniProt] hypothetical protein
25pilL26817..28130 [+], 1314327413078  [UniProt] putative type IV pilus proteinVF
26pilM28132..28575 [+], 444327413079  [UniProt] putative exported proteinVF
27pilN28591..30279 [+], 1689327413080  [UniProt] putative pilus assembly proteinVF
28pilO30279..31595 [+], 1317327413081  [UniProt] putative pilus assembly protein
29pilP31582..32136 [+], 555327413082  [UniProt] putative pilus protein
30pilQ32148..33689 [+], 1542327413083  [UniProt] putative nucleotide binding proteinVF
31pilR33682..34794 [+], 1113327413084  [UniProt] putative membrane proteinVF
32pilS34813..35409 [+], 597327413085  [UniProt] putative prepilinVF
33pilT35413..35892 [+], 480327413086  [UniProt] putative membrane protein
34pilU35889..36542 [+], 654327413087  [UniProt] prepilin peptidaseVF
35pilV36556..37896 [+], 1341327413088  [UniProt] prepilinVF
36CTnscr_07739114..40613 [+], 1500327413089  [UniProt] putative transposaseVF
37CTnscr_07640610..41374 [+], 765327413090  [UniProt] putative insertion sequence proteinVF
38rci41901..43016 [+], 1116327413091  [UniProt] shufflon-specific DNA recombinase
39CTnscr_07343120..44004 [+], 885327413092  [UniProt] putative membrane protein
40CTnscr_07244023..44748 [+], 726327413093  [UniProt] putative exported protein
41CTnscr_07144727..45335 [+], 609327413094  [UniProt] putative soluble lytic transglycosylase
42CTnscr_07045332..45844 [+], 513327413095  [UniProt] putative exported protein
43CTnscr_06945841..46506 [+], 666327413096  [UniProt] putative type II restriction endonuclease
44CTnscr_06846836..47633 [+], 798327413097  [UniProt] conserved hypothetical protein
45CTnscr_06747630..49750 [+], 2121327413098  [UniProt] conserved hypothetical protein
46CTnscr_06649737..50495 [+], 759327413099  [UniProt] putative membrane protein
47CTnscr_06550965..52059 [-], 1095327413100  [UniProt] putative DNA binding protein
48CTnscr_06452091..52684 [-], 594327413101  [UniProt] conserved hypothetical protein
49-52778..52957 [-], 180327413102  [UniProt] hypothetical protein
50-53045..53305 [-], 261327413103  [UniProt] hypothetical protein
51CTnscr_06353419..53733 [+], 315327413104  [UniProt] putative exported protein
52CTnscr_062a53730..53969 [+], 240327413105  [UniProt] putative membrane protein
53CTnscr_06253984..54358 [+], 375327413106  [UniProt] putative membrane protein
54api3454368..54742 [+], 375327413107  [UniProt] putative membrane protein
55CTnscr_06054739..55398 [+], 660327413108  [UniProt] putative membrane protein
56CTnscr_05955398..56276 [+], 879327413109  [UniProt] putative exported protein
57CTnscr_05856273..57808 [+], 1536327413110  [UniProt] putative membrane protein
58CTnscr_057a57822..58076 [+], 255327413111  [UniProt] hypothetical protein
59CTnscr_05758067..58471 [+], 405327413112  [UniProt] putative lipoprotein
60CTnscr_05658471..61302 [+], 2832327413113  [UniProt] conserved hypothetical protein
61CTnscr_05561299..61703 [+], 405327413114  [UniProt] conserved hypothetical protein
62CTnscr_05461796..62281 [-], 486327413115  [UniProt] conserved hypothetical protein
63CTnscr_05362632..62844 [-], 213327413116  [UniProt] putative transcriptional regulator, PerC family
64CTnscr_05262991..65378 [+], 2388327413117  [UniProt] conserved hypothetical protein
65CTnscr_05165517..66035 [+], 519327413118  [UniProt] conserved hypothetical protein
66CTnscr_05066904..67305 [+], 402327413119  [UniProt] putative exported protein
67CTnscr_04967302..68273 [+], 972327413120  [UniProt] putative exported protein
68CTnscr_04868285..69709 [+], 1425327413121  [UniProt] putative exported protein
69CTnscr_04769706..70074 [+], 369327413122  [UniProt] putative membrane protein
70CTnscr_04670071..71636 [+], 1566327413123  [UniProt] putative membrane protein
71CTnscr_04571666..72046 [-], 381327413124  [UniProt] hypothetical protein
72CTnscr_04472635..73054 [-], 420327413125  [UniProt] hypothetical protein
73CTnscr_04373377..73802 [-], 426327413126  [UniProt] hypothetical protein
74CTnscr_04273852..74775 [+], 924327413127  [UniProt] hypothetical protein
75CTnscr_04174995..76884 [+], 1890327413128  [UniProt] putative restriction endonuclease, alpha subunit
76CTnscr_04076871..77833 [+], 963327413129  [UniProt] putative restriction endonuclease, beta subunit
77scrK78143..79069 [+], 927327413130  [UniProt] fructokinase
78scrY79226..80743 [+], 1518327413131  [UniProt] sucrose porin precursor
79scrA80788..82158 [+], 1371327413132  [UniProt] sucrose transporter
80scrB82158..83567 [+], 1410327413133  [UniProt] sucrose-6-phosphate hydrolase
81scrR83597..84616 [+], 1020327413134  [UniProt] sucrose operon repressor
82CTnscr_03485214..86905 [+], 1692327413135  [UniProt] putative two-partner secretion family proteinVF
83CTnscr_03386918..97285 [+], 10368327413136  [UniProt] putative adhesin
84CTnscr_03297289..97624 [+], 336327413137  [UniProt] conserved hypothetical protein
85CTnscr_031a97684..98025 [+], 342327413138  [UniProt] hypothetical protein
86CTnscr_03198077..99393 [+], 1317327413139  [UniProt] putative ion channel
87CTnscr_030100391..101281 [+], 891327413140  [UniProt] conserved hypothetical protein
88CTnscr_029101909..102298 [+], 390327413141  [UniProt] hypothetical protein
89CTnscr_028102292..102741 [+], 450327413142  [UniProt] hypothetical protein
90CTnscr_026103306..103917 [+], 612327413143  [UniProt] conserved hypothetical protein
91CTnscr_025104543..109973 [+], 5431pseudogene conserved hypothetical protein (pseudogene)
92CTnscr_024105631..106578 [+], 948327413144  [UniProt] conserved hypothetical protein
93CTnscr_022107221..107829 [+], 609327413145  [UniProt] putative IS element protein
94CTnscr_021107826..108173 [+], 348327413146  [UniProt] putative insertion sequence proteinVF
95CTnscr_020108193..109749 [+], 1557327413147  [UniProt] putative transposaseVF
96CTnscr_018110180..111964 [+], 1785327413148  [UniProt] conserved hypothetical protein
97CTnscr_017111945..112613 [-], 669327413149  [UniProt] hypothetical protein
98CTnscr_016113155..113574 [-], 420327413150  [UniProt] hypothetical protein
99CTnscr_015113609..115285 [-], 1677327413151  [UniProt] putative methyl-accepting chemotaxis proteinVF
100CTnscr_014115425..115700 [+], 276327413152  [UniProt] putative transposase
101CTnscr_013115619..116122 [+], 504327413153  [UniProt] putative transposaseVF
102CTnscr_012117361..117762 [-], 402327413154  [UniProt] conserved hypothetical protein
103CTnscr_011117779..118258 [-], 480327413155  [UniProt] putative DNA binding protein
104CTnscr_010118509..119168 [-], 660327413156  [UniProt] hypothetical protein
105CTnscr_009119189..119410 [-], 222327413157  [UniProt] hypothetical protein
106CTnscr_008119394..119708 [-], 315327413158  [UniProt] putative lipoprotein
107CTnscr_007119863..120105 [-], 243327413159  [UniProt] hypothetical protein
108traF120167..121369 [-], 1203327413160  [UniProt] Type IV pilus protein, TraFVF
109CTnscr_005121474..122499 [-], 1026327413161  [UniProt] putative type IV pilus protein, traE
110CTnscr_004122696..123259 [-], 564327413162  [UniProt] putative membrane protein-pilK-like
111CTnscr_003123447..124991 [+], 1545327413163  [UniProt] putative helicase /relaxase
112CTnscr_002125030..125989 [+], 960327413164  [UniProt] putative phage integraseVF
113CTnscr_001126494..127201 [-], 708327413165 putative membrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins106Fasta
(1) Moreno Switt AI; den Bakker HC; Cummings CA; Rodriguez-Rivera LD; Govoni G; Raneiri ML; Degoricija L; Brown S; Hoelzer K; Peters JE; Bolchacova E; Furtado MR; Wiedmann M (2012). Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 7(7):e41247. [PudMed:22911766] in_silico
(2) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(3) Hochhut B; Jahreis K; Lengeler JW; Schmid K (1997). CTnscr94, a conjugative transposon found in enterobacteria. J Bacteriol. 179(7):2097-102. [PudMed:9079891] experimental
 
experimental experimental literature
in_silico in silico analysis literature