ICEberg
ICEberg ID71
NameICEEc2
FamilyUnclassified
OrganismEscherichia coli BEN374
Size (bp)93895
GC content [Genome] (%)51
Insertion sitetRNA-Phe
Function-
Species that ICE can be transferred toSalmonella enterica serovar Typhimurium and Yersinia pseudotuberculosis
Nucleotide SequenceGU725392 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates77..93971
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICEEc2 form GU725392
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1ECAGIv1_0001273..1262 [-], 990297592275  [UniProt] tyrosine recombinase xerC-like protein
2ECAGIv1_00021316..2938 [-], 1623297592276  [UniProt] hypothetical protein
3ECAGIv1_00032931..4439 [-], 1509297592277  [UniProt] putative superfamily I DNA and RNA helicase
4ECAGIv1_00044728..4919 [+], 192297592278  [UniProt] hypothetical protein
5ECAGIv1_00054966..5184 [+], 219297592279  [UniProt] hypothetical protein
6ECAGIv1_00075926..6402 [+], 477297592280  [UniProt] putative PilM protein
7ECAGIv1_00086410..6622 [-], 213297592281  [UniProt] hypothetical protein
8pilN6610..8217 [+], 1608297592282  [UniProt] PilN
9pilO8241..9527 [+], 1287297592283  [UniProt] PilO
10pilP9517..9978 [+], 462297592284  [UniProt] pilus type IV assembly protein
11pilQ9988..11508 [+], 1521297592285  [UniProt] type IV pilusVF
12pilR11510..12610 [+], 1101297592286  [UniProt] PilR
13pilS12660..13196 [+], 537297592287  [UniProt] PilS
14pilT13255..13731 [+], 477297592288  [UniProt] PilTVF
15pilV14391..15683 [+], 1293297592289  [UniProt] PilV
16rci17170..18267 [+], 1098297592290  [UniProt] Rci
17traE18480..19301 [+], 822297592291  [UniProt] TraE protein
18traF19508..20605 [+], 1098297592292  [UniProt] TraF proteinVF
19ECAGIv1_002120742..20885 [+], 144297592293  [UniProt] hypothetical protein
20ECAGIv1_002221043..21324 [+], 282297592294  [UniProt] hypothetical protein
21ECAGIv1_002321945..22184 [+], 240297592295  [UniProt] hypothetical protein
22dfrA123681..24154 [+], 474297592296  [UniProt] dihydrofolate reductase type 1AR
23sat224249..24773 [+], 525297592297  [UniProt] streptothricin acetyltransferase
24aadA124831..25619 [+], 789297592298  [UniProt] streptomycin 3''-adenylyltransferaseAR VF
25ECAGIv1_002925695..26192 [+], 498297592299  [UniProt] hypothetical protein
26ECAGIv1_003026253..26624 [+], 372297592300  [UniProt] hypothetical protein
27ECAGIv1_003127034..27411 [+], 378297592301  [UniProt] YbgA protein
28ECAGIv1_003227461..27586 [+], 126297592302  [UniProt] putative transposase
29tnsE27642..29258 [-], 1617297592303  [UniProt] transposon Tn7 transposition protein tnsE
30tnsD29259..30785 [-], 1527297592304  [UniProt] transposon Tn7 transposition protein tnsD
31tnsC30788..32455 [-], 1668297592305  [UniProt] transposon Tn7 transposition protein tnsC
32tnsB32452..34560 [-], 2109297592306  [UniProt] transposon Tn7 transposition protein tnsB
33tnsA34547..35368 [-], 822297592307  [UniProt] transposon Tn7 transposition protein tnsA
34ECAGIv1_004037333..38031 [-], 699297592308  [UniProt] hypothetical protein
35ECAGIv1_004138308..39270 [-], 963297592309  [UniProt] hypothetical protein
36ECAGIv1_004239378..39812 [-], 435297592310  [UniProt] hypothetical protein
37ECAGIv1_004440297..40656 [-], 360297592311  [UniProt] hypothetical protein
38ECAGIv1_004540854..41363 [-], 510297592312  [UniProt] anti-restriction protein
39ECAGIv1_004641504..41695 [-], 192297592313  [UniProt] hypothetical protein
40ECAGIv1_004741782..42168 [-], 387297592314  [UniProt] hypothetical protein
41ECAGIv1_004842321..42950 [-], 630297592315  [UniProt] hypothetical protein
42ECAGIv1_004943273..44013 [+], 741297592316  [UniProt] hypothetical protein
43ECAGIv1_005044017..44934 [-], 918297592317  [UniProt] putative integrase/DNA breaking-rejoining enzyme
44ECAGIv1_005146064..46291 [-], 228297592318  [UniProt] hypothetical protein
45ECAGIv1_005246461..46736 [+], 276297592319  [UniProt] hypothetical protein
46ECAGIv1_005346832..47149 [+], 318297592320  [UniProt] hypothetical protein
47ECAGIv1_005447244..47441 [-], 198297592321  [UniProt] hypothetical protein
48ECAGIv1_005547926..48189 [-], 264297592322  [UniProt] putative ribosomal protein
49ECAGIv1_005648414..48926 [-], 513297592323  [UniProt] hypothetical protein
50ECAGIv1_005749284..49490 [+], 207297592324  [UniProt] hypothetical protein
51ECAGIv1_005849538..51061 [-], 1524297592325  [UniProt] putative TraG-like protein
52ECAGIv1_005951058..51417 [-], 360297592326  [UniProt] putative membrane protein
53ECAGIv1_006051422..52843 [-], 1422297592327  [UniProt] putative exported protein
54ECAGIv1_006152850..53824 [-], 975297592328  [UniProt] putative exported protein
55ECAGIv1_006253821..54216 [-], 396297592329  [UniProt] hypothetical protein
56ECAGIv1_006354751..56838 [-], 2088297592330  [UniProt] Iha adhesinVF
57ECAGIv1_006456994..57380 [-], 387297592331  [UniProt] hypothetical protein
58ECAGIv1_006557377..60226 [-], 2850297592332  [UniProt] putative TraC plasmid-related ATPase
59ECAGIv1_006660226..60630 [-], 405297592333  [UniProt] putative lipoprotein
60ECAGIv1_006760648..62126 [-], 1479297592334  [UniProt] putative bacterial conjugation TrbI-like protein
61ECAGIv1_006862116..63036 [-], 921297592335  [UniProt] putative exported protein
62ECAGIv1_006963033..63680 [-], 648297592336  [UniProt] hypothetical protein
63ECAGIv1_007063677..64042 [-], 366297592337  [UniProt] hypothetical protein
64ECAGIv1_007164062..64427 [-], 366297592338  [UniProt] putative membrane protein
65ECAGIv1_007264455..64697 [-], 243297592339  [UniProt] hypothetical protein
66ECAGIv1_007364697..65038 [-], 342297592340  [UniProt] putative exported protein with RAQPRD domain
67ECAGIv1_007465282..65473 [+], 192297592341  [UniProt] hypothetical protein
68ECAGIv1_007565557..66318 [-], 762297592342  [UniProt] putative transmembrane protein
69ECAGIv1_007666299..68452 [-], 2154297592343  [UniProt] putative TraD plasmid transfer protein
70ECAGIv1_007768416..69201 [-], 786297592344  [UniProt] hypothetical protein
71ECAGIv1_007869198..69632 [-], 435297592345  [UniProt] hypothetical protein
72ECAGIv1_007969707..70297 [-], 591297592346  [UniProt] putative restriction endonuclease
73ECAGIv1_008070297..70824 [-], 528297592347  [UniProt] hypothetical protein
74ECAGIv1_008170821..71456 [-], 636297592348  [UniProt] putative Lytic transglycosylase, catalytic precursor
75ECAGIv1_008271456..72175 [-], 720297592349  [UniProt] putative exported protein
76ECAGIv1_008372180..72959 [-], 780297592350  [UniProt] hypothetical protein
77ECAGIv1_008472956..73492 [-], 537297592351  [UniProt] putative PilL proteinVF
78ECAGIv1_008573725..73910 [-], 186297592352  [UniProt] hypothetical protein
79ECAGIv1_008674107..75156 [-], 1050297592353  [UniProt] putative transposase, YhgA-like protein
80ssb75122..75679 [-], 558297592354  [UniProt] single-stranded DNA-binding proteinVF
81ECAGIv1_008875692..75895 [-], 204297592355  [UniProt] hypothetical protein
82ECAGIv1_008975995..76459 [-], 465297592356  [UniProt] hypothetical protein
83ECAGIv1_009077150..79168 [-], 2019297592357  [UniProt] DNA topoisomerase 3
84ECAGIv1_009179185..79910 [-], 726297592358  [UniProt] hypothetical protein
85ECAGIv1_009280012..80662 [-], 651297592359  [UniProt] hypothetical protein
86ECAGIv1_009380662..81927 [-], 1266297592360  [UniProt] hypothetical protein
87ECAGIv1_009482188..82409 [-], 222297592361  [UniProt] putative Sb34 protein
88ECAGIv1_009582406..82621 [-], 216297592362  [UniProt] hypothetical protein
89ECAGIv1_009682670..83083 [-], 414297592363  [UniProt] hypothetical protein
90ECAGIv1_009783094..83333 [-], 240297592364  [UniProt] hypothetical protein
91ECAGIv1_009883293..83514 [-], 222297592365  [UniProt] hypothetical protein
92ECAGIv1_009983516..83914 [-], 399297592366  [UniProt] hypothetical protein
93ECAGIv1_010083911..84426 [-], 516297592367  [UniProt] hypothetical protein
94ECAGIv1_010184428..84946 [-], 519297592368  [UniProt] putative ea22-like protein
95ECAGIv1_010285014..85235 [-], 222297592369  [UniProt] putative transcriptional regulator
96ECAGIv1_010385232..85444 [-], 213297592370  [UniProt] putative ea22-like protein
97ECAGIv1_010485441..85617 [-], 177297592371  [UniProt] hypothetical protein
98ECAGIv1_010585624..85872 [-], 249297592372  [UniProt] hypothetical protein
99ECAGIv1_010685869..86447 [-], 579297592373  [UniProt] hypothetical protein
100ECAGIv1_010786444..87175 [-], 732297592374  [UniProt] hypothetical protein
101ECAGIv1_010887168..88817 [-], 1650297592375  [UniProt] hypothetical protein
102dnaB88807..90195 [-], 1389297592376  [UniProt] replicative DNA helicase
103ECAGIv1_011090329..90880 [+], 552297592377  [UniProt] hypothetical protein
104ECAGIv1_011191270..92148 [-], 879297592378  [UniProt] putative chromosome partitioning protein
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins104Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PudMed:22247511] in_silico
(2) Roche D; Flechard M; Lallier N; Reperant M; Bree A; Pascal G; Schouler C; Germon P (2010). ICEEc2, a new integrative and conjugative element belonging to the pKLC102/PAGI-2 family, identified in Escherichia coli strain BEN374. J Bacteriol. 192(19):5026-36. [PudMed:20675467] experimental
 
experimental experimental literature
in_silico in silico analysis literature