ICEberg
ICEberg
ICEberg ID73
NameICEF-II
FamilyICEF-I/II
OrganismMycoplasma fermentans PG18
Size (bp)22331
GC content [Genome] (%)-
Insertion sitepdhA, orf251
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAY168955; AY168956; AY168957; AY168958; AY168960; AY168959; AY168961; AY168962; AY168963; AY168964; AY168965 (partical ICE sequence)
experimental This is a ICE derived from experimental literature.
Incomplete gene list of ICEF-II from AY168957
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..1413 [+], 141326984122 hypothetical protein
2-1489..2709 [+], 122126984123 ORF406
3-3430..4149 [+], 72026984124  [UniProt] ICEF-IIB ORF1
4-4380..4571 [+], 19226984125  [UniProt] ICEF-IIB ORF2
5-4592..5794 [+], 120326984126  [UniProt] putative relaxase
6-5804..5983 [+], 18026984127  [UniProt] ICEF-IIB ORF6
Incomplete gene list of ICEF-II from AY168956
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..2127 [+], 212726984117  [UniProt] ICEF-IIA ORF19
2-2717..3643 [+], 92726984118  [UniProt] ICEF-IIA ORF21
3ICEF-IIA ORF223692..4857 [+], 1166pseudogene -
4-5233..5374 [-], 14226984119 putative ABC transporter ATP-binding cassette protein
5tnp5510..5902 [-], 39326984120 IS3 family transposase
Incomplete gene list of ICEF-II from AY168955
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-38..724 [+], 68726984107  [UniProt] ORF228
2-2301..4403 [-], 210326984108  [UniProt] ORF700
3ORF2514507..5130 [-], 624pseudogene -
4-5373..6092 [+], 72026984109  [UniProt] ICEF-IIA ORF1
5-6323..6514 [+], 19226984110  [UniProt] ICEF-IIA ORF2
6-6535..7737 [+], 120326984111  [UniProt] ICEF-IIA ORF3
7-7747..8214 [+], 46826984112  [UniProt] ICEF-IIA ORF4
8-8214..10433 [+], 222026984113  [UniProt] ICEF-IIA ORF5
9-10444..10632 [+], 18926984114  [UniProt] ICEF-IIA ORF6
10-10634..10979 [+], 34626984115  [UniProt] ICEF-IIA ORF7
Incomplete gene list of ICEF-II from AY168958
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..763 [+], 76326984129  [UniProt] ICEF-IIB ORF22
Incomplete gene list of ICEF-II from AY168965
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..1479 [+], 147926984164  [UniProt] ICEF-II ORF17
2-1460..2143 [+], 68426984165  [UniProt] ICEF-II ORF18
3-2189..4332 [+], 214426984166  [UniProt] ICEF-II ORF19
Incomplete gene list of ICEF-II from AY168964
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..1151 [+], 115126984160  [UniProt] P57 lipoprotein
2-1266..1547 [+], 28226984161  [UniProt] ICEF-II ORF15
3ICEF-II ORF161547..2736 [+], 1190pseudogene -
4-2752..5565 [+], 281426984162  [UniProt] ICEF-II ORF17
Incomplete gene list of ICEF-II from AY168963
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..103 [+], 10326984154  [UniProt] ICEF-II ORF12
2-103..357 [+], 25526984155  [UniProt] ICEF-II ORF13
3-381..1949 [+], 156926984156  [UniProt] P57 lipoprotein
4-2064..2345 [+], 28226984157  [UniProt] ICEF-II ORF15
5ICEF-II ORF162345..3534 [+], 1190pseudogene -
6-3550..4890 [+], 134126984158  [UniProt] ICEF-II ORF17
Incomplete gene list of ICEF-II from AY168962
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..608 [+], 60826984147  [UniProt] ICEF-II ORF7
2-617..856 [+], 24026984148  [UniProt] ICEF-II ORF8
3-869..1585 [+], 71726984149  [UniProt] ICEF-II ORF11
4-1595..2146 [+], 55226984150  [UniProt] ICEF-II ORF12
5-2146..2400 [+], 25526984151  [UniProt] ICEF-II ORF13
6-2424..2847 [+], 42426984152  [UniProt] P57 lipoprotein
Incomplete gene list of ICEF-II from AY168961
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..1648 [+], 164826984141  [UniProt] ICEF-II ORF5
2-1659..1847 [+], 18926984142  [UniProt] ICEF-II ORF6
3-1849..2796 [+], 94826984143  [UniProt] ICEF-II ORF7
4-3057..3773 [+], 71726984144  [UniProt] ICEF-II ORF11
5-3783..4237 [+], 45526984145  [UniProt] ICEF-II ORF12
Incomplete gene list of ICEF-II from AY168960
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..363 [-], 36326984135 ORF472
2-937..1656 [+], 72026984136  [UniProt] ICEF-IIC ORF1
3ICEF-IIC ORF21887..2078 [+], 192pseudogene -
4-2099..3301 [+], 120326984137  [UniProt] ICEF-IIC ORF3
5-3311..3778 [+], 46826984138  [UniProt] ICEF-IIC ORF4
6-3778..4355 [+], 57826984139  [UniProt] ICEF-IIC ORF5
Incomplete gene list of ICEF-II from AY168959
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-1..763 [+], 76326984131  [UniProt] ICEF-IIC ORF22
2ORF2421343..2072 [-], 730pseudogene -
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences11Fasta
Proteins43Fasta
(1) Calcutt MJ; Lewis MS; Wise KS (2002). Molecular genetic analysis of ICEF, an integrative conjugal element that is present as a repetitive sequence in the chromosome of Mycoplasma fermentans PG18. J Bacteriol. 184(24):6929-41. [PudMed:12446643] experimental
 
experimental experimental literature