ICEberg
ICEberg ID79
NameICESt3
FamilyICESt1
OrganismStreptococcus thermophilus CNRZ385
Size (bp)28091
GC content [Genome] (%)37
Insertion sitefda
Function-
Species that ICE can be transferred toStreptococcus pyogenes; Enterococcus faecalis
Nucleotide SequenceAJ586568 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates204..28293
Link to view genome context of this ICE in the genome browser
experimental This is a ICE derived from experimental literature.
Complete gene list of ICESt3 form AJ586568
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-565..1356 [-], 79246019823  [UniProt] hypothetical protein
2-1520..3192 [+], 1673pseudogene -
3-4092..4466 [+], 37546019824  [UniProt] hypothetical protein
4-4483..4785 [+], 30346019825  [UniProt] hypothetical protein
5-5079..6176 [+], 109846019826  [UniProt] putative cytosine-specific methyltransferase
6-6163..7389 [+], 122746019827  [UniProt] putative cytosine-specific methyltransferaseVF
7-7414..8457 [-], 104446019828  [UniProt] hypothetical protein
8-8650..9390 [-], 74146019829  [UniProt] hypothetical protein
9-9659..10447 [-], 789pseudogene -
10-10478..10792 [-], 315pseudogene -
11arp110981..11667 [-], 68746019830  [UniProt] putative transcriptional regulator
12-11676..12479 [-], 80446019831  [UniProt] putative transcriptional regulator
13-12795..12989 [-], 19546019832  [UniProt] putative transmembrane protein
14-13029..13217 [-], 18946019833  [UniProt] putative transcriptional regulator
15arp213223..13564 [-], 34246019834  [UniProt] putative transcriptional regulator
16-14427..14723 [+], 29746019835  [UniProt] putative transfer protein
17-14745..15206 [+], 46246019836  [UniProt] putative transfer protein
18-15220..16908 [+], 168946019837  [UniProt] putative transfer protein
19-17116..18348 [+], 123346019838  [UniProt] putative transfer protein
20-18363..18593 [+], 23146019839  [UniProt] hypothetical protein
21-18597..19154 [+], 55846019840  [UniProt] putative transfer protein
22-19166..20161 [+], 99646019841  [UniProt] putative transfer protein
23-20171..20395 [+], 22546019842  [UniProt] putative transfer protein
24-20398..20808 [+], 41146019843  [UniProt] putative transfer protein
25-20822..23326 [+], 250546019844  [UniProt] putative transfer protein
26-23338..25218 [+], 188146019845  [UniProt] putative transfer protein
27-25220..25444 [+], 22546019846  [UniProt] hypothetical protein
28-25470..26582 [+], 111346019847  [UniProt] putative transfer protein
29xis26596..26844 [+], 24946019848  [UniProt] excisionase
30int26844..28190 [+], 134746019849  [UniProt] tyrosine integrase
31fda28274..28369 [-], 9646019850 putative fructose-1,6-diphosphate aldolase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins27Fasta
(1) Carraro N; Libante V; Morel C; Decaris B; Charron-Bourgoin F; Leblond P; Guedon G (2011). Differential regulation of two closely related integrative and conjugative elements from Streptococcus thermophilus. BMC Microbiol. 0.623611111. [PudMed:22024428] experimental
(2) Bellanger X; Morel C; Gonot F; Puymege A; Decaris B; Guedon G (2011). Site-specific accretion of an integrative conjugative element together with a related genomic island leads to cis mobilization and gene capture. Mol Microbiol. 81(4):912-25. [PudMed:21722203] experimental
(3) Bellanger X; Roberts AP; Morel C; Choulet F; Pavlovic G; Mullany P; Decaris B; Guedon G (2009). Conjugative transfer of the integrative conjugative elements ICESt1 and ICESt3 from Streptococcus thermophilus. J Bacteriol. 191(8):2764-75. [PudMed:19181800] experimental
(4) Bellanger X; Morel C; Decaris B; Guedon G (2008). Regulation of excision of integrative and potentially conjugative elements from Streptococcus thermophilus: role of the arp1 repressor. J Mol Microbiol Biotechnol. 14(1-3):16-21. [PudMed:17957106] experimental
(5) Bellanger X; Morel C; Decaris B; Guedon G (2007). Derepression of excision of integrative and potentially conjugative elements from Streptococcus thermophilus by DNA damage response: implication of a cI-related repressor. J Bacteriol. 189(4):1478-81. [PudMed:17114247] experimental
(6) Pavlovic G; Burrus V; Gintz B; Decaris B; Guedon G (2004). Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology. 150(Pt 4):759-74. [PudMed:15073287] experimental
 
experimental experimental literature