ICEberg
ICEberg ID83
NameICESpn23771
FamilyTn916
OrganismStreptococcus pneumoniae 23771
Size (bp)25880
GC content [Genome] (%)38
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFR671415 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..25880
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESpn23771 form FR671415
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1orf231..315 [+], 315321157380  [UniProt] conjugative transposon protein
2orf22334..717 [+], 384321157381  [UniProt] conjugative transposon protein
3orf21746..2131 [+], 1386321157382  [UniProt] conjugative transposon FtsK/SpoIIIE-family protein
4orf202309..3727 [+], 1419321157383  [UniProt] putative conjugative transposon replication initiation factor
5ermB3984..4721 [+], 738321157384  [UniProt] rRNA methylaseAR
6-4978..6225 [-], 1248321157385  [UniProt] Transposase
7orf196405..6626 [+], 222321157386  [UniProt] conjugative transposon protein
8orf186743..7240 [+], 498321157387  [UniProt] conjugative transposon protein
9orf177491..7721 [+], 231321157388  [UniProt] putative conjugative transposon membrane protein
10orf167705..10152 [+], 2448321157389  [UniProt] conjugative transposon ATP/GTP-binding protein
11orf1510155..12332 [+], 2178321157390  [UniProt] conjugative transposon membrane protein
12orf1412329..13330 [+], 1002321157391  [UniProt] putative cell wall hydrolaseVF
13orf1313345..14259 [+], 915321157392  [UniProt] putative conjugative transposon exported protein
14tetM14636..16555 [+], 1920321157393  [UniProt] conjugative transposon tetracycline resistance proteinAR
15-16767..17164 [+], 398321157394  [UniProt] UmuC/MucB-like protein
16-17161..17496 [+], 336321157395  [UniProt] ImsC-like protein
17-17509..17877 [+], 369321157396  [UniProt] YolD domain protein
18mel18281..19744 [-], 1464321157397  [UniProt] ABC transporter ATPase subunit
19mef19864..21081 [-], 1218321157398  [UniProt] Macrolide efflux transporterAR
20orf922410..22763 [-], 354321157399  [UniProt] putative conjugative transposon regulatory protein
21SPN23F1306122893..23039 [+], 147321157400  [UniProt] putative uncharacterized protein
22orf723268..23690 [+], 423321157401  [UniProt] putative conjugative transposon regulatory protein
23xis24378..24581 [+], 204321157402  [UniProt] excisionase
24Integrase24663..25880 [+], 1218321157403  [UniProt] putative integrase (pseudogene)
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins24Fasta
(1) Croucher NJ; Harris SR; Fraser C; Quail MA; Burton J; van der Linden M; McGee L; von Gottberg A; Song JH; Ko KS; Pichon B; Baker S; Parry CM; Lambertsen LM; Shahinas D; Pillai DR; Mitchell TJ; Dougan G; Tomasz A; Klugman KP; Parkhill J; Hanage WP; Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science. 331(6016):430-4. [PudMed:21273480] experimental
 
experimental experimental literature