ICEberg
ICEberg ID84
NameICESpn11930
FamilyTn5253
OrganismStreptococcus pneumoniae 11930
Size (bp)73716
GC content [Genome] (%)35.5
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFR671403 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..73716
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESpn11930 form FR671403
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1Integrase81..1589 [-], 1509321156785  [UniProt] Integrase
2-1674..1943 [-], 270321156786  [UniProt] Excisionase
3-2505..4334 [-], 1830321156787  [UniProt] Relaxase
4-4321..4686 [-], 366321156788  [UniProt] putative mobilisation protein
5-4691..5047 [-], 357321156789  [UniProt] putative mobilisation protein
6-5342..5632 [-], 291321156790  [UniProt] Conserved hypothetical protein
7-5622..5984 [-], 363321156791  [UniProt] Conserved hypothetical protein
8-5984..7399 [-], 1416321156792  [UniProt] UmuC-like DNA repair protein
9-7402..8166 [-], 765321156793  [UniProt] Putative helix turn helix DNA binding proteinTA
10-8341..8721 [-], 381321156794  [UniProt] zeta toxinTA
11-8927..9670 [-], 744321156795  [UniProt] Neopullulanase
12rep9961..10884 [+], 924321156796  [UniProt] replication protein
13-11749..12399 [-], 651321156797  [UniProt] putative chloramphenicol acetyltransferaseAR
14-12570..12818 [-], 249321156798  [UniProt] putative uncharacterized protein
15-13057..13845 [-], 789321156799  [UniProt] putative uncharacterized protein
16-14321..15079 [-], 759321156800  [UniProt] zeta toxin
17-15690..15977 [-], 288321156801  [UniProt] putative uncharacterized protein
18-16015..16398 [-], 384321156802  [UniProt] putative uncharacterized protein
19-16395..16628 [-], 234321156803  [UniProt] putative uncharacterized protein
20-16679..17764 [-], 1086321156804  [UniProt] putative uncharacterized protein
21-17774..18415 [-], 642321156805  [UniProt] putative uncharacterized protein
22-18575..18748 [+], 174321156806  [UniProt] Conserved hypothetical protein
23-18762..19058 [-], 297321156807  [UniProt] putative uncharacterized protein
24-19072..19356 [-], 285321156808  [UniProt] putative uncharacterized protein
25-19431..28164 [-], 8734321156809  [UniProt] putative conjugative transposon DNA recombination protein
26-20483..22294 [-], 1812321156810  [UniProt] putative group II intron reverse transcriptase/maturase
27-28197..28607 [-], 411pseudogene putative uncharacterized protein (pseudogene)
28-29038..29730 [-], 693321156811  [UniProt] Membrane protein
29-29784..30353 [-], 570321156812  [UniProt] putative permease
30-30371..31129 [-], 759321156813  [UniProt] ABC transporter, ATP-binding protein
31-31624..31737 [+], 114pseudogene Transposase fragment
32-31988..33205 [-], 1218321156814  [UniProt] putative integrase
33xis33287..33490 [-], 204321156815  [UniProt] excisionase
34orf734178..34600 [-], 423321156816  [UniProt] putative conjugative transposon regulatory protein
35orf935105..40729 [+], 5625pseudogene putative conjugative transposon regulatory protein (pseudogene)
36-35400..38318 [-], 2919321156817  [UniProt] Transposase
37tnpR38322..38876 [-], 555321156818  [UniProt] Resolvase
38ermB39231..39968 [-], 738321156819  [UniProt] -AR
39tetM41075..43009 [-], 1935321156820  [UniProt] Tetracycline resistance proteinAR
40orf1343371..44306 [-], 936321156821  [UniProt] putative conjugative transposon exported protein
41orf1444303..45304 [-], 1002321156822  [UniProt] putative cell wall hydrolaseVF
42orf1545301..47412 [-], 2112321156823  [UniProt] conjugative transposon membrane protein
43orf1647481..49928 [-], 2448321156824  [UniProt] conjugative transposon ATP/GTP-binding protein
44orf1749912..50418 [-], 507321156825  [UniProt] putative conjugative transposon membrane protein
45orf1850393..50890 [-], 498321156826  [UniProt] conjugative transposon protein
46orf1951007..51174 [-], 168321156827  [UniProt] conjugative transposon protein
47-51408..52655 [+], 1248321156828  [UniProt] Transposase
48ermB52912..53649 [-], 738321156829  [UniProt] erm(b) methylase; subname: full=mls methylase; subname: full=rrna adenine n-6-methyltransferase; ec=2.1.1.48; subname: full=erm(b) methylase; subname: full=mls methylase; subname: full=rRNA adenine N-6-methyltransferase; ec=2.1.1.48AR
49orf2053906..55324 [-], 1419321156830  [UniProt] putative conjugative transposon replication initiation factor
50orf2155502..56887 [-], 1386321156831  [UniProt] conjugative transposon FtsK/SpoIIIE-family protein
51orf2256916..57302 [-], 387321156832  [UniProt] conjugative transposon protein
52orf2357318..57632 [-], 315321156833  [UniProt] conjugative transposon protein
53-58199..61012 [-], 2814321156834  [UniProt] putative conjugal transfer protein
54-61024..63339 [-], 2316321156835  [UniProt] putative conjugal transfer protein
55-63332..63691 [-], 360321156836  [UniProt] putative uncharacterized protein
56-63745..64599 [-], 855321156837  [UniProt] putative uncharacterized protein
57-64616..64858 [-], 243321156838  [UniProt] putative uncharacterized protein
58traG64879..66756 [-], 1878321156839  [UniProt] putative conjugal transfer protein TraG
59-66756..67244 [-], 489321156840  [UniProt] putative uncharacterized protein
60-67234..67533 [-], 300321156841  [UniProt] putative uncharacterized protein
61-67816..68652 [-], 837321156842  [UniProt] conserved hypothetical protein
62-68652..69296 [-], 645321156843  [UniProt] conserved hypothetical protein
63-69370..69957 [-], 588321156844  [UniProt] putative membrane protein
64-69960..70193 [-], 234321156845  [UniProt] putative uncharacterized protein
65-70206..70586 [-], 381321156846  [UniProt] putative uncharacterized protein
66-70579..71028 [-], 450321156847  [UniProt] putative uncharacterized protein
67-71012..72370 [-], 1359321156848  [UniProt] putative DNA methylase
68-72469..73248 [-], 780321156849  [UniProt] putative replication initiator protein
69-73245..73418 [-], 174321156850  [UniProt] putative uncharacterized protein
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins66Fasta
(1) Croucher NJ; Harris SR; Fraser C; Quail MA; Burton J; van der Linden M; McGee L; von Gottberg A; Song JH; Ko KS; Pichon B; Baker S; Parry CM; Lambertsen LM; Shahinas D; Pillai DR; Mitchell TJ; Dougan G; Tomasz A; Klugman KP; Parkhill J; Hanage WP; Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science. 331(6016):430-4. [PudMed:21273480] experimental
 
experimental experimental literature