ICEberg
ICEberg ID85
NameICESpn11930-2
FamilyTn916
OrganismStreptococcus pneumoniae 11930
Size (bp)25645
GC content [Genome] (%)37.5
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFR671416 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..25645
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESpn11930-2 form FR671416
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1orf231..315 [+], 315321157405  [UniProt] conjugative transposon protein
2orf22331..717 [+], 387321157406  [UniProt] conjugative transposon protein
3orf21746..2131 [+], 1386321157407  [UniProt] conjugative transposon FtsK/SpoIIIE-family protein
4orf202309..3727 [+], 1419321157408  [UniProt] putative conjugative transposon replication initiation factor
5ermB3984..4721 [+], 738321157409  [UniProt] rRNA methylaseAR
6-4978..6225 [-], 1248321157410  [UniProt] Transposase
7orf196459..6626 [+], 168321157411  [UniProt] conjugative transposon protein
8orf186743..7240 [+], 498321157412  [UniProt] conjugative transposon protein
9orf177491..7721 [+], 231321157413  [UniProt] putative conjugative transposon membrane protein
10orf167705..10152 [+], 2448321157414  [UniProt] conjugative transposon ATP/GTP-binding protein
11orf1510221..12332 [+], 2112321157415  [UniProt] conjugative transposon membrane protein
12orf1412329..13330 [+], 1002321157416  [UniProt] putative cell wall hydrolaseVF
13orf1313327..14262 [+], 936321157417  [UniProt] putative conjugative transposon exported protein
14tetM14624..16558 [+], 1935321157418  [UniProt] conjugative transposon tetracycline resistance proteinAR
15orf916907..22528 [-], 5622pseudogene putative conjugative transposon regulatory protein (pseudogene)
16ermB17665..18402 [+], 738321157419  [UniProt] rRNA methylaseAR
17tnpR18757..19311 [+], 555321157420  [UniProt] Resolvase
18-19315..22233 [+], 2919321157421  [UniProt] Transposase
19SPN23F1306122658..22804 [+], 147321157422  [UniProt] putative uncharacterized protein
20orf723033..23455 [+], 423321157423  [UniProt] putative conjugative transposon regulatory protein
21xis24143..24346 [+], 204321157424  [UniProt] excisionase
22int24428..25645 [+], 1218321157425  [UniProt] putative integrase
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins21Fasta
(1) Croucher NJ; Harris SR; Fraser C; Quail MA; Burton J; van der Linden M; McGee L; von Gottberg A; Song JH; Ko KS; Pichon B; Baker S; Parry CM; Lambertsen LM; Shahinas D; Pillai DR; Mitchell TJ; Dougan G; Tomasz A; Klugman KP; Parkhill J; Hanage WP; Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science. 331(6016):430-4. [PudMed:21273480] experimental
 
experimental experimental literature