ICEberg
ICEberg ID87
NameICESpn9409
FamilyTn916
OrganismStreptococcus pneumoniae 9409
Size (bp)22765
GC content [Genome] (%)38.4
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFR671418 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..22765
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESpn9409 form FR671418
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1orf231..315 [+], 315321157446  [UniProt] conjugative transposon protein
2orf22334..717 [+], 384321157447  [UniProt] conjugative transposon protein
3orf21746..2131 [+], 1386321157448  [UniProt] conjugative transposon FtsK/SpoIIIE-family protein
4orf202309..3571 [+], 1263321157449  [UniProt] putative conjugative transposon replication initiation factor
5-3561..3815 [+], 255321157450  [UniProt] Omega transcriptional repressor protein
6aph3908..4702 [+], 795321157451  [UniProt] Aminoglycoside phosphotransferaseAR
7-5186..5551 [+], 366321157452  [UniProt] Conserved hypothetical protein
8-5575..5724 [+], 150321157453  [UniProt] Conserved hypothetical protein
9-5880..6149 [+], 270321157454  [UniProt] Omega transcriptional repressor protein
10ermB6379..7116 [+], 738321157455  [UniProt] rRNA methylaseAR
11-7373..8620 [-], 1248321157456  [UniProt] Transposase
12orf198800..9021 [+], 222321157457  [UniProt] conjugative transposon protein
13orf189138..9635 [+], 498321157458  [UniProt] conjugative transposon protein
14orf179886..10116 [+], 231321157459  [UniProt] putative conjugative transposon membrane protein
15orf1610100..12547 [+], 2448321157460  [UniProt] conjugative transposon ATP/GTP-binding protein
16orf1512550..14727 [+], 2178321157461  [UniProt] conjugative transposon membrane protein
17orf1414724..15725 [+], 1002321157462  [UniProt] putative cell wall hydrolaseVF
18orf1315740..16654 [+], 915321157463  [UniProt] putative conjugative transposon exported protein
19tetM17031..18950 [+], 1920321157464  [UniProt] conjugative transposon tetracycline resistance proteinAR
20orf919296..19649 [-], 354321157465  [UniProt] putative conjugative transposon regulatory protein
21SPN23F1306119779..19925 [+], 147321157466  [UniProt] putative uncharacterized protein
22orf720154..20576 [+], 423321157467  [UniProt] putative conjugative transposon regulatory protein
23xis21264..21467 [+], 204321157468  [UniProt] excisionase
24int21549..22765 [+], 1217321157469  [UniProt] putative integrase (pseudogene)
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins24Fasta
(1) Croucher NJ; Harris SR; Fraser C; Quail MA; Burton J; van der Linden M; McGee L; von Gottberg A; Song JH; Ko KS; Pichon B; Baker S; Parry CM; Lambertsen LM; Shahinas D; Pillai DR; Mitchell TJ; Dougan G; Tomasz A; Klugman KP; Parkhill J; Hanage WP; Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science. 331(6016):430-4. [PudMed:21273480] experimental
 
experimental experimental literature