ICEberg
ICEberg ID88
NameICESpn11876
FamilyTn5253
OrganismStreptococcus pneumoniae 11876
Size (bp)71516
GC content [Genome] (%)35.3
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFR671404 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..71516
Link to view genome context of this ICE in the genome browser
in_silico This is a predicted ICE derivied from literature.
Complete gene list of ICESpn11876 form FR671404
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-168..1355 [-], 1188321156852  [UniProt] integrase
2-1327..1635 [-], 309321156853  [UniProt] conserved hypothetical protein
3-2690..2851 [-], 162321156854  [UniProt] Hypothetical protein
4-3644..4825 [-], 1182321156855  [UniProt] MFS transporter
5-4848..5342 [-], 495321156856  [UniProt] Putative CoA-depedent acetyltransferase
6-5363..5506 [+], 144321156857  [UniProt] Membrane protein
7-6090..6386 [-], 297321156858  [UniProt] ABC transporter, ATPase subunit
8-6571..6699 [-], 129321156859  [UniProt] Membrane protein
9-6879..8702 [-], 1824321156860  [UniProt] Tn5252 relaxase
10-8689..9054 [-], 366321156861  [UniProt] Tn5252 orf9 protein
11-9059..9403 [-], 345321156862  [UniProt] Tn5252 orf10 protein
12-9791..10285 [-], 495321156863  [UniProt] Conserved hypothetical protein
13-10406..10546 [+], 141pseudogene Transposase fragment (pseudogene)
14-10705..10848 [-], 144321156864  [UniProt] Conserved hypothetical protein
15-10923..11555 [-], 633321156865  [UniProt] Conserved hypothetical protein
16-11637..11912 [-], 276321156866  [UniProt] putative uncharacterized protein
17-11950..12333 [-], 384321156867  [UniProt] putative uncharacterized protein
18-12330..12563 [-], 234321156868  [UniProt] putative uncharacterized protein
19-12614..13699 [-], 1086321156869  [UniProt] putative uncharacterized protein
20-13709..14350 [-], 642321156870  [UniProt] putative uncharacterized protein
21-15513..16421 [+], 909321156871  [UniProt] Putative helix-turn-helix DNA binding protein
22-16374..40692 [-], 24319pseudogene Metalloprotease (pseudogene)
23-17228..18445 [-], 1218321156872  [UniProt] putative integrase
24xis18527..18730 [-], 204321156873  [UniProt] excisionase
25orf719418..19840 [-], 423321156874  [UniProt] putative conjugative transposon regulatory protein
26-20069..20215 [-], 147321156875  [UniProt] putative uncharacterized protein
27orf920345..20698 [+], 354321156876  [UniProt] putative conjugative transposon regulatory protein
28tetM21044..22978 [-], 1935321156877  [UniProt] conjugative transposon tetracycline resistance proteinAR
29orf1323215..24150 [-], 936321156878  [UniProt] putative conjugative transposon exported protein
30orf1424147..25148 [-], 1002321156879  [UniProt] putative cell wall hydrolaseVF
31orf1525145..27256 [-], 2112321156880  [UniProt] conjugative transposon membrane protein
32orf1627325..29649 [-], 2325321156881  [UniProt] conjugative transposon ATP/GTP-binding protein
33orf1729756..29986 [-], 231321156882  [UniProt] putative conjugative transposon membrane protein
34orf1830237..30734 [-], 498321156883  [UniProt] conjugative transposon protein
35orf1930851..31072 [-], 222321156884  [UniProt] conjugative transposon protein
36-31252..32499 [+], 1248321156885  [UniProt] Transposase
37ermB32756..33493 [-], 738321156886  [UniProt] rRNA methylaseAR
38-33722..33991 [-], 270321156887  [UniProt] Omega transcriptional repressor
39-34147..34296 [-], 150321156888  [UniProt] Conserved hypothetical protein
40-34323..34893 [-], 571pseudogene Putative helix-turn-helix DNA binding protein (pseudogene)
41-35169..35963 [-], 795321156889  [UniProt] Aminoglycoside phosphotransferaseAR
42-36056..36277 [-], 222321156890  [UniProt] Omega transcriptional regulator
43orf2036300..37562 [-], 1263321156891  [UniProt] putative conjugative transposon replication initiation factor
44orf2137740..39125 [-], 1386321156892  [UniProt] conjugative transposon FtsK/SpoIIIE-family protein
45orf2239154..39540 [-], 387321156893  [UniProt] conjugative transposon protein
46orf2339556..39843 [-], 288321156894  [UniProt] conjugative transposon protein
47-40685..41806 [-], 1122321156895  [UniProt] HesA/MoeB/ThiF domain protein
48-42258..43652 [-], 1395321156896  [UniProt] ABC transporter, ATPase subunit
49-44045..44341 [-], 297321156897  [UniProt] Membrane protein
50-44355..44639 [-], 285321156898  [UniProt] putative uncharacterized protein
51-44714..50959 [-], 6246321156899  [UniProt] putative conjugative transposon DNA recombination protein
52-50992..51402 [-], 411pseudogene putative uncharacterized protein (pseudogene)
53-51553..52137 [-], 585321156900  [UniProt] putative uncharacterized protein
54-52375..55188 [-], 2814321156901  [UniProt] putative conjugal transfer protein
55-55200..57557 [-], 2358321156902  [UniProt] putative conjugal transfer protein
56-57508..57867 [-], 360321156903  [UniProt] putative uncharacterized protein
57-57921..58775 [-], 855321156904  [UniProt] putative uncharacterized protein
58-58792..59034 [-], 243321156905  [UniProt] putative uncharacterized protein
59traG59055..60932 [-], 1878321156906  [UniProt] putative conjugal transfer protein TraG
60-60932..61396 [-], 465321156907  [UniProt] putative uncharacterized protein
61-61410..61709 [-], 300321156908  [UniProt] putative uncharacterized protein
62-62303..62935 [-], 633321156909  [UniProt] ABC efflux transporter, ATPase subunit
63-62937..64946 [-], 2010321156910  [UniProt] ABC efflux transporter permease subunit
64-65008..65304 [-], 297321156911  [UniProt] Bacteriocin
65-65601..66053 [-], 453321156912  [UniProt] conserved hypothetical protein
66-66407..67042 [-], 636321156913  [UniProt] Conserved hypothetical protein
67-67332..67919 [-], 588321156914  [UniProt] putative CAAX amino terminal protease
68-67922..68155 [-], 234321156915  [UniProt] putative uncharacterized protein
69-68168..68548 [-], 381321156916  [UniProt] putative uncharacterized protein
70-68541..68990 [-], 450321156917  [UniProt] putative uncharacterized protein
71-68974..70332 [-], 1359321156918  [UniProt] putative DNA methylase
72-70431..71210 [-], 780321156919  [UniProt] putative replication initiator protein
73-71207..71419 [-], 213321156920  [UniProt] putative uncharacterized protein
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins69Fasta
(1) Croucher NJ; Harris SR; Fraser C; Quail MA; Burton J; van der Linden M; McGee L; von Gottberg A; Song JH; Ko KS; Pichon B; Baker S; Parry CM; Lambertsen LM; Shahinas D; Pillai DR; Mitchell TJ; Dougan G; Tomasz A; Klugman KP; Parkhill J; Hanage WP; Bentley SD (2011). Rapid pneumococcal evolution in response to clinical interventions. Science. 331(6016):430-4. [PudMed:21273480] experimental
 
experimental experimental literature