ICEberg
ICEberg ID89
NameSXT(ET)
FamilySXT/R391
OrganismVibrio cholerae O1 biovar El Tor 1999
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAY035340 (partical ICE sequence)
experimental This is a ICE derived from experimental literature.
Incomplete gene list of SXT(ET) from AY035340
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1traF1..945 [-], 94516197748  [UniProt] TraF
2intI91202..2290 [-], 108916197749  [UniProt] site-specific tyrosine recombinaseVF
3dfrA12453..2926 [+], 47416197750  [UniProt] dihydrofolate reductaseAR
4-3031..3456 [+], 42616197751  [UniProt] unknown
5-3654..4064 [+], 41116197752  [UniProt] unknown
6-4135..4497 [+], 36316197753  [UniProt] unknown
7-4597..5298 [+], 70216197754  [UniProt] unknown
8-5295..5540 [-], 24616197755  [UniProt] unknown
9-5971..6202 [-], 23216197756  [UniProt] unknown
 
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins9Fasta
(1) Pande K; Mendiratta DK; Vijayashri D; Thamke DC; Narang P (2012). SXT constin among Vibrio cholerae isolates from a tertiary care hospital. Indian J Med Res. 135:346-50. [PudMed:22561621] experimental
(2) Hochhut B; Lotfi Y; Mazel D; Faruque SM; Woodgate R; Waldor MK (2001). Molecular analysis of antibiotic resistance gene clusters in vibrio cholerae O139 and O1 SXT constins. Antimicrob Agents Chemother. 45(11):2991-3000. [PudMed:11600347] experimental
 
experimental experimental literature