ICEberg
ICEberg ID95
NameTn5252 (part of Tn5253)
FamilyTn5253
OrganismStreptococcus pneumoniae BM6001
Size (bp)~47.5 k
GC content [Genome] (%)-
Insertion site-
FunctionUV Resistance
Species that ICE can be transferred toStreptococcus pneumoniae
Nucleotide SequenceAF295925 (partical ICE sequence)
experimental This is a ICE derived from experimental literature.
Incomplete gene list of Tn5252 (part of Tn5253) from AF295925
#GeneCoordinates [+/-], size (bp)Protein GI Product *
1-452..1567 [-], 111611559696  [UniProt] Orf28
2-1651..3210 [-], 156011559695  [UniProt] Orf27
3-3293..5656 [-], 236411559694  [UniProt] Orf26
4-5601..5957 [-], 35711559693  [UniProt] Orf25
5-6011..6244 [-], 23411559692  [UniProt] Orf24
6-6445..6753 [-], 30911559691  [UniProt] Orf23
7-6939..7136 [-], 19811559690  [UniProt] Orf22
8-7204..8619 [-], 141611559689  [UniProt] Orf21
9-8715..9053 [-], 33911559688  [UniProt] Orf20
 
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins9Fasta
(1) Srinivas P; Vijayakumar MN (2000). Genetic and transcriptional analysis of a regulatory region in streptococcal conjugative transposon Tn5252. Plasmid. 44(3):262-74. [PudMed:11078652] experimental
(2) Munoz-Najar U; Vijayakumar MN (1999). An operon that confers UV resistance by evoking the SOS mutagenic response in streptococcal conjugative transposon Tn5252. J Bacteriol. 181(9):2782-8. [PudMed:10217768] experimental
(3) Vijayakumar MN; Kilic AO; Srinivas P (1995). Genetic organization of streptococcal conjugative transposon Tn5252. Dev Biol Stand. 85:63-9. [PudMed:8586242] experimental
(4) Vijayakumar MN; Ayalew S (1993). Nucleotide sequence analysis of the termini and chromosomal locus involved in site-specific integration of the streptococcal conjugative transposon Tn5252. J Bacteriol. 175(9):2713-9. [PudMed:8386725] experimental
(5) Kilic AO; Vijayakumar MN; al-Khaldi SF (1994). Identification and nucleotide sequence analysis of a transfer-related region in the streptococcal conjugative transposon Tn5252. J Bacteriol. 176(16):5145-50. [PudMed:8051031] experimental
(6) Ayoubi P; Kilic AO; Vijayakumar MN (1991). Tn5253, the pneumococcal omega (cat tet) BM6001 element, is a composite structure of two conjugative transposons, Tn5251 and Tn5252. J Bacteriol. 173(5):1617-22. [PudMed:1847905] experimental
 
experimental experimental literature