ICEberg
ICEberg contains data from 458 references related to integrative and conjugative elements (ICEs). Last Update: Nov 25, 2012

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reviews in silico analyses experimental studies genome sequencing all
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Number of references found for the 'genome sequencing' category : 52

References
(1) Diene SM et al (2012). The Rhizome of the Multidrug-Resistant Enterobacter aerogenes Genome Reveals How New "Killer Bugs" Are Created because of a Sympatric Lifestyle. Mol Biol Evol. . [PudMed:23071100]
(2) Boyd DA et al (2012). The VanE operon in Enterococcus faecalis N00-410 is found on a putative integrative and conjugative element, Tn6202. J Antimicrob Chemother. . [PudMed:23034711]
(3) Qi J et al (2012). Comparative geno-plasticity analysis of Mycoplasma bovis HB0801 (Chinese isolate). PLoS One. 7(5):e38239. [PudMed:22693604]
(4) Tse H et al (2012). Molecular characterization of the 2011 Hong Kong scarlet fever outbreak. J Infect Dis. 206(3):341-51. [PudMed:22615319]
(5) Zheng Q et al (2012). Gain and loss of phototrophic genes revealed by comparison of two Citromicrobium bacterial genomes. PLoS One. 7(4):e35790. [PudMed:22558224]
(6) Schwientek P et al (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics. 0.619444444. [PudMed:22443545]
(7) Gillespie JJ et al (2012). A Rickettsia genome overrun by mobile genetic elements provides insight into the acquisition of genes characteristic of an obligate intracellular lifestyle. J Bacteriol. 194(2):376-94. [PudMed:22056929]
(8) Sjolund-Karlsson M et al (2011). Drug-resistance mechanisms in Vibrio cholerae O1 outbreak strain, Haiti, 2010. Emerg Infect Dis. 17(11):2151-4. [PudMed:22099122]
(9) Shu HW et al (2011). Genome Sequence of the Repetitive-Sequence-Rich Mycoplasma fermentans Strain M64. J Bacteriol. 193(16):4302-3. [PudMed:21642450]
(10) Lin IH et al (2011). Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence. PLoS One. 6(5):e20519. [PudMed:21633709]
(11) Thiaucourt F et al (2011). Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective. BMC Genomics. 12:114. [PudMed:21324191]
(12) Wise KS et al (2011). Complete genome sequence of Mycoplasma bovis type strain PG45 (ATCC 25523). Infect Immun. 79(2):982-3. [PudMed:21134966]
(13) Schijffelen MJ et al (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 11:376. [PudMed:20546576]
(14) Gibson DG et al (2010). Creation of a bacterial cell controlled by a chemically synthesized genome. Science. 329(5987):52-6. [PudMed:20488990]
(15) Fischer W et al (2010). Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101. [PudMed:20478826]
(16) Janssen PJ et al (2010). The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One. 5(5):e10433. [PudMed:20463976]
(17) Grim CJ et al (2010). Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae. J Bacteriol. 192(13):3524-33. [PudMed:20348258]
(18) Denapaite D et al (2010). The genome of Streptococcus mitis B6--what is a commensal. PLoS One. 5(2):e9426. [PudMed:20195536]
(19) Rusniok C et al (2010). Genome sequence of Streptococcus gallolyticus: insights into its adaptation to the bovine rumen and its ability to cause endocarditis. J Bacteriol. 192(8):2266-76. [PudMed:20139183]
(20) Nouvel LX et al (2010). Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics. 11:86. [PudMed:20122262]
(21) Paauw A et al (2010). Evolution in quantum leaps: multiple combinatorial transfers of HPI and other genetic modules in Enterobacteriaceae. PLoS One. 5(1):e8662. [PudMed:20084283]
(22) Taviani E et al (2009). Genomic analysis of a novel integrative conjugative element in Vibrio cholerae. FEBS Lett. 583(22):3630-6. [PudMed:19850044]
(23) Holden MT et al (2009). Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLoS One. 4(7):e6072. [PudMed:19603075]
(24) Wu KM et al (2009). Genome sequencing and comparative analysis of Klebsiella pneumoniae NTUH-K2044, a strain causing liver abscess and meningitis. J Bacteriol. 191(14):4492-501. [PudMed:19447910]
(25) Ding F et al (2009). Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. BMC Genomics. 10:158. [PudMed:19361343]
(26) Holden MT et al (2009). Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens. PLoS Pathog. 5(3):e1000346. [PudMed:19325880]
(27) Mavrodi DV et al (2009). Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol. 9:8. [PudMed:19144133]
(28) Croucher NJ et al (2009). Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81. J Bacteriol. 191(5):1480-9. [PudMed:19114491]
(29) Winstanley C et al (2009). Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. Genome Res. 19(1):12-23. [PudMed:19047519]
(30) Fouts DE et al (2008). Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice. PLoS Genet. 4(7):e1000141. [PudMed:18654632]
(31) Naito M et al (2008). Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15(4):215-25. [PudMed:18524787]
(32) Nakayama K et al (2008). The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. DNA Res. 15(4):185-99. [PudMed:18508905]
(33) Mathee K et al (2008). Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A. 105(8):3100-5. [PudMed:18287045]
(34) Camilli R et al (2008). New genetic element carrying the erythromycin resistance determinant erm(TR) in Streptococcus pneumoniae. Antimicrob Agents Chemother. 52(2):619-25. [PudMed:18070957]
(35) Eppinger M et al (2007). The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet. 3(8):e142. [PudMed:17784789]
(36) Beres SB et al (2007). Contribution of exogenous genetic elements to the group A Streptococcus metagenome. PLoS One. 2(8):e800. [PudMed:17726530]
(37) Chen C et al (2007). A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. PLoS One. 2(3):e315. [PudMed:17375201]
(38) Oliynyk M et al (2007). Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. Nat Biotechnol. 25(4):447-53. [PudMed:17369815]
(39) Thomson NR et al (2006). The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet. 2(12):e206. [PudMed:17173484]
(40) Pembroke JT et al (2006). A novel ICE in the genome of Shewanella putrefaciens W3-18-1: comparison with the SXT/R391 ICE-like elements. FEMS Microbiol Lett. 264(1):80-8. [PudMed:17020552]
(41) Sebaihia M et al (2006). The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet. 38(7):779-86. [PudMed:16804543]
(42) Harrison A et al (2005). Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20. J Bacteriol. 187(13):4627-36. [PudMed:15968074]
(43) Banks DJ et al (2004). Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. J Infect Dis. 190(4):727-38. [PudMed:15272401]
(44) Paulsen IT et al (2003). Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science. 299(5615):2071-4. [PudMed:12663927]
(45) Ajdic D et al (2002). Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. Proc Natl Acad Sci U S A. 99(22):14434-9. [PudMed:12397186]
(46) Glaser P et al (2002). Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol. 45(6):1499-513. [PudMed:12354221]
(47) Tettelin H et al (2002). Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. Proc Natl Acad Sci U S A. 99(19):12391-6. [PudMed:12200547]
(48) Salanoubat M et al (2002). Genome sequence of the plant pathogen Ralstonia solanacearum. Nature. 415(6871):497-502. [PudMed:11823852]
(49) Parkhill J et al (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature. 413(6858):848-52. [PudMed:11677608]
(50) Kuroda M et al (2001). Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet. 357(9264):1225-40. [PudMed:11418146]
(51) Kaneko T et al (2000). Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. DNA Res. 7(6):331-8. [PudMed:11214968]
(52) Davidson BE et al (1995). Genomic organization of Lactococci. Dev Biol Stand. 85:411-22. [PudMed:8586212]