SecReT4
T4SS ID102
StrainEscherichia coli plasmid pAPEC-O2-R (NC_006671)
Repliconplasmid pAPEC-O2-R [Browse all T4SS(s) in this replicon]
AccessionNC_006671
Location7540..40351
NameTra_F
Functionconjugation
ClassificationType IVA; Type F
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number111111111
ComponentTraY_FTrbC_FOrf169_F
Number111

The information of T4SS components from NC_006671
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1O2R_94028..4618 [-], 59158000398hypothetical protein 
2O2R_10 (hha)4656..4865 [-], 21058000397Hha protein 
3O2R_11 (yigB)4911..5435 [-], 52558000396YigB 
4O2R_125571..5813 [-], 24358000395hypothetical protein 
5O2R_13 (finO)5958..6518 [-], 56158000394conjugal transfer fertility inhibition protein FinO 
6O2R_146621..7481 [-], 86158000393hypothetical protein 
7O2R_15 (traX)7540..8286 [-], 74758000392conjugal transfer pilus acetylation protein TraX  TraX_F
8O2R_16 (traI)8306..13576 [-], 527158000391conjugal transfer nickase/helicase TraI  TraI_F
9O2R_17 (traD)13576..15726 [-], 215158000390conjugal transfer protein TraD  TraD_F
10O2R_18 (traT)16027..16803 [-], 77758000389conjugal transfer surface exclusion protein TraT 
11O2R_20 (traG)17308..20130 [-], 282358000388conjugal transfer mating pair stabilization protein TraG  TraG_F
12O2R_21 (traH)20127..21503 [-], 137758000387conjugal transfer pilus assembly protein TraH  TraH_F
13O2R_22 (trbJ)21500..21862 [-], 363228861735conjugal transfer protein TrbJ 
14O2R_2321792..22337 [-], 54658000385conjugal transfer protein TrbB 
15O2R_24 (traQ)22324..22608 [-], 28558000384conjugal transfer pilin chaperone TraQ  TraQ_F
16O2R_25 (trbA)22727..23074 [-], 34858000383conjugal transfer protein TrbA 
17O2R_26 (traF)23090..23833 [-], 74458000382conjugal pilus assembly protein TraF  TraF_F
18O2R_2723826..24083 [-], 25858000381conjugal transfer protein TrbE 
19O2R_28 (traN)24110..25918 [-], 180958000380conjugal transfer mating pair stabilization protein TraN  TraN_F
20O2R_29 (trbC)25915..26517 [-], 60358000379conjugal transfer pilus assembly protein TrbC  TrbC_F
21O2R_30 (traU)26562..27554 [-], 99358000378conjugal transfer pilus assembly protein TraU  TraU_F
22O2R_31 (traW)27551..28183 [-], 633228861734conjugal transfer pilus assembly protein TraW  TraW_F
23O2R_32 (trbI)28180..28566 [-], 38758000376conjugal transfer protein TrbI 
24O2R_33 (traC)28563..31193 [-], 263158000375conjugal transfer ATP-binding protein TraC  TraC_F
25O2R_3431319..31681 [-], 36358000374hypothetical protein 
26O2R_3531709..31924 [-], 21658000373hypothetical protein 
27O2R_3632004..32477 [-], 47458000372hypothetical protein 
28O2R_37 (traR)32470..32682 [-], 21358000371conjugal transfer protein TraR 
29O2R_38 (traV)32761..33276 [-], 51658000370conjugal transfer protein TraV  TraV_F
30O2R_39 (trbG)33273..33524 [-], 25258000369conjugal transfer protein TrbG 
31O2R_40 (trbD)33521..33838 [-], 31858000368conjugal transfer protein TrbD 
32O2R_41 (traP)33835..34407 [-], 57358000367conjugal transfer protein TraP 
33O2R_42 (traB)34397..35824 [-], 142858000366conjugal transfer pilus assembly protein TraB  TraB_F
34O2R_43 (traK)35824..36552 [-], 72958000365conjugal transfer protein TraK  TraK_F
35O2R_44 (traE)36539..37105 [-], 56758000364conjugal transfer pilus assembly protein TraE  TraE_F
36O2R_45 (traL)37127..37438 [-], 31258000363conjugal transfer pilus assembly protein TraL  TraL_F
37O2R_46 (traA)37453..37812 [-], 36058000362conjugal transfer pilin subunit TraA  TraA_F
38O2R_47 (traY)37846..38166 [-], 32158000361conjugal transfer protein TraY  TraY_F
39O2R_48 (traJ)38167..38853 [-], 68758000360hypothetical protein 
40O2R_49 (traM)39044..39427 [-], 38458000359conjugal transfer protein TraM  TraM_F
41O2R_5039758..40351 [+], 59458000358lytic transglycosylase  Orf169_F
42O2R_5140648..41469 [-], 82258000357hypothetical protein 
43O2R_5241650..41922 [+], 27358000356hypothetical protein 
44O2R_5341902..42108 [-], 20758000355hypothetical protein 
45O2R_5442144..42356 [-], 21358000354hypothetical protein 
46O2R_5542279..42512 [+], 23458000353hypothetical protein 
47O2R_56 (hok)42798..42956 [-], 15958000352small toxic polypeptide 
48O2R_58 (psiA)43236..43955 [-], 72058000351plasmid SOS inhibition protein A 
49O2R_59 (psiB)43952..44386 [-], 43558000350plasmid SOS inhibition protein B 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Johnson TJ; Siek KE; Johnson SJ; Nolan LK (2005). DNA sequence and comparative genomics of pAPEC-O2-R, an avian pathogenic Escherichia coli transmissible R plasmid. Antimicrob Agents Chemother. 49(11):4681-8. [PudMed:16251312]