SecReT4
T4SS ID126
StrainPantoea sp. At-9b plasmid pPAT9B02 (NC_014839)
Repliconplasmid pPAT9B02 [Browse all T4SS(s) in this replicon]
AccessionNC_014839
Location65..8490; 228257..229033; 366626..391496
NameTra_F
FunctionNA
ClassificationType IVA; Type F
insolico This T4SS is identified in this study.

T4SS components
ComponentTraA_FTraB_FTraC_FTraD_FTraE_FTraF_FTraG_FTraH_FTraI_F
Number111111111
ComponentTraK_FTraL_FTraM_FTraN_FTraQ_FTraU_FTraV_FTraW_FTraX_F
Number110101111
ComponentTraY_FTrbC_FOrf169_F
Number011

The information of T4SS components from NC_014839
Region 1: 65..8490
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Pat9b_472165..2677 [+], 2613317053480type IV conjugative transfer system coupling protein TraD  TraD_F
2Pat9b_47222674..8490 [+], 5817317053481conjugative transfer relaxase protein TraI  TraI_F
3Pat9b_47249273..9710 [-], 438317053482Glyoxalase/bleomycin resistance protein/dioxygenase 
4Pat9b_47259883..10797 [+], 915317053483Integrase catalytic region 
5Pat9b_472611246..11500 [-], 255317053484hypothetical protein 
6Pat9b_472711692..12030 [+], 339317053485putative DNA-damage-inducible protein J 
7Pat9b_472812015..12326 [-], 312317053486hypothetical protein 
 
Region 2: 228257..229033
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Pat9b_4952223350..224153 [+], 804317053674polar amino acid ABC transporter, inner membrane subunit 
2Pat9b_4953224146..224889 [+], 744317053675ABC transporter-like protein 
3Pat9b_4954224904..225995 [+], 1092317053676FAD dependent oxidoreductase 
4Pat9b_4955226595..227197 [+], 603317053677Cupin 2 conserved barrel domain-containing protein 
5Pat9b_4956227709..228074 [+], 366317053678histone family protein nucleoid-structuring protein H-NS 
6Pat9b_4957228257..229033 [+], 777317053679TraX family protein  TraX_F
7Pat9b_4958229030..229920 [-], 891317053680metallophosphoesterase 
8Pat9b_4959229933..230727 [-], 795317053681binding-protein-dependent transport systems inner membrane component 
9Pat9b_4960230724..231635 [-], 912317053682binding-protein-dependent transport systems inner membrane component 
10Pat9b_4961231635..232912 [-], 1278317053683extracellular solute-binding protein family 1 
 
Region 3: 366626..391496
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Pat9b_5088361736..362203 [-], 468317053778hypothetical protein 
2Pat9b_5089362366..362710 [+], 345317053779hypothetical protein 
3Pat9b_5090362697..363068 [+], 372317053780IS66 Orf2 family protein 
4Pat9b_5091363095..364690 [+], 1596317053781transposase IS66 
5Pat9b_5092364762..365007 [-], 246317053782hypothetical protein 
6Pat9b_5093365414..365725 [+], 312317053783hypothetical protein 
7Pat9b_5094365782..366603 [+], 822317053784hypothetical protein 
8Pat9b_5095366626..367159 [-], 534317053785Lytic transglycosylase catalytic  Orf169_F
9Pat9b_5096368009..368401 [+], 393317053786hypothetical protein 
10Pat9b_5097368773..369459 [-], 687317053787hypothetical protein 
11Pat9b_5098369671..370063 [+], 393317053788TraA family protein  TraA_F
12Pat9b_5099370072..370374 [+], 303317053789type IV conjugative transfer system protein TraL  TraL_F
13Pat9b_5100370426..371025 [+], 600317053790type IV conjugative transfer system protein TraE  TraE_F
14Pat9b_5101371029..371766 [+], 738317053791type-F conjugative transfer system secretin TraK  TraK_F
15Pat9b_5102371763..373130 [+], 1368317053792TraB pilus assembly family protein  TraB_F
16Pat9b_5103373149..373661 [+], 513317053793NusG antitermination factor 
17Pat9b_5104373658..374032 [+], 375317053794hypothetical protein 
18Pat9b_5105374086..374559 [+], 474317053795hypothetical protein 
19Pat9b_5106374552..374734 [+], 183317053796hypothetical protein 
20Pat9b_5107374772..375008 [+], 237317053797hypothetical protein 
21Pat9b_5108375165..375713 [+], 549317053798type IV conjugative transfer system protein TraV  TraV_F
22Pat9b_5109375713..375991 [+], 279317053799hypothetical protein 
23Pat9b_5110375981..378620 [+], 2640317053800type-IV secretion system protein TraC  TraC_F
24Pat9b_5111378636..379082 [+], 447317053801type-F conjugative transfer system protein TrbI 
25Pat9b_5112379079..379699 [+], 621317053802type-F conjugative transfer system protein TraW  TraW_F
26Pat9b_5113379696..379986 [+], 291317053803hypothetical protein 
27Pat9b_5114380158..380499 [+], 342317053804hypothetical protein 
28Pat9b_5115380496..381488 [+], 993317053805TraU family protein  TraU_F
29Pat9b_5116381498..382124 [+], 627317053806type-F conjugative transfer system pilin assembly protein TrbC  TrbC_F
30Pat9b_5117382121..383959 [+], 1839317053807conjugal transfer mating pair stabilization protein TraN  TraN_F
31Pat9b_5118383959..384756 [+], 798317053808type-F conjugative transfer system pilin assembly protein TraF  TraF_F
32Pat9b_5119384767..385237 [+], 471317053809hypothetical protein 
33Pat9b_5120385234..385446 [+], 213317053810hypothetical protein 
34Pat9b_5121385436..386062 [+], 627317053811conjugal transfer protein TrbB 
35Pat9b_5122386098..386403 [+], 306317053812hypothetical protein 
36Pat9b_5123386415..386930 [+], 516317053813AAA ATPase 
37Pat9b_5124387005..388372 [+], 1368317053814TraH family protein  TraH_F
38Pat9b_5125388365..391496 [+], 3132317053815TraG domain-containing protein  TraG_F
39Pat9b_5126391523..392092 [+], 570317053816hypothetical protein 
40Pat9b_5127392221..392952 [+], 732317053817TraT complement resistance family protein 
41Pat9b_5128393037..393351 [+], 315317053818hypothetical protein 
42Pat9b_5129393688..393996 [+], 309317053819hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
Identified as part of this study from NC_014839