SecReT4
T4SS ID16
StrainAgrobacterium rhizogenes plasmid pRi2659 (NC_010841)
Repliconplasmid pRi2659 [Browse all T4SS(s) in this replicon]
AccessionNC_010841
Location157955..177542
NameVirB
Functioneffector translocation and conjugation
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number111111111
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_010841
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pRi2659_p120153072..154424 [+], 1353190404463rcorf119 
2pRi2659_p121154628..157183 [+], 2556190404464two-component VirA-like sensor kinase 
3pRi2659_p122157955..158677 [+], 723190404465type IV secretion system lytic transglycosylase VirB1  VirB1
4pRi2659_p123158677..159042 [+], 366190404466type IV secretion system pilin subunit VirB2  VirB2
5pRi2659_p124159039..159365 [+], 327190404467type IV secretion system protein VirB3  VirB3
6pRi2659_p125159365..161734 [+], 2370190404468type IV secretion system protein VirB4  VirB4
7pRi2659_p126161751..162419 [+], 669190404469type IV secretion system protein VirB5  VirB5
8pRi2659_p127162486..163373 [+], 888190404470type IV secretion system protein VirB6  VirB6
9pRi2659_p128163401..163568 [+], 168190404471type IV secretion system lipoprotein VirB7  VirB7
10pRi2659_p129163555..164268 [+], 714190404472type IV secretion system protein VirB8  VirB8
11pRi2659_p130164265..165143 [+], 879190404473type IV secretion system protein VirB9  VirB9
12pRi2659_p131165143..166273 [+], 1131190404474type IV secretion system protein VirB10  VirB10
13pRi2659_p132166307..167341 [+], 1035190404475type IV secretion system protein VirB11  VirB11
14pRi2659_p133167577..168302 [+], 726228861208two-component response regulator VirG 
15pRi2659_p134168409..168765 [-], 357190404477rcorf133 
16pRi2659_p135168741..169106 [-], 366190404478rcorf134 
17pRi2659_p136169270..169875 [-], 606190404479putative crown gall tumor protein VirC2 
18pRi2659_p137169878..170573 [-], 696190404480putative crown gall tumor protein VirC1 
19pRi2659_p138170828..171274 [+], 447190404481type IV secretion system T-DNA border endonuclease VirD1 
20pRi2659_p139171300..172646 [+], 1347190404482type IV secretion system T-DNA border endonuclease VirD2 
21pRi2659_p140172477..175500 [+], 3024190404483rcorf139 
22pRi2659_p141175560..177542 [+], 1983190404484type IV secretion system protein VirD4  VirD4
23pRi2659_p142177650..180157 [+], 2508190404485rcorf141 
24pRi2659_p143180410..181339 [+], 930190404486rcorf142 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This system delivers both DNA and proteins into plant cell. The transferred DNA (T-DNA) region: NC_010841: 1..4247)

Effectors
GALLS, VirF, VirD2, VirD5, VirE3

The information of protein effectors
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  *
1pRi2659_p029 34384..39693 [-], 5310190404372rcorf28  GALLS
2pRi2659_p115 146513..147466 [+], 954190404458rcorf114  VirF
3pRi2659_p139 171300..172646 [+], 1347190404482type IV secretion system T-DNA border endonuclease VirD2  VirD2
4pRi2659_p142 177650..180157 [+], 2508190404485rcorf141  VirD5
5pRi2659_p144 181443..182798 [+], 1356190404487rcorf143  VirE3

Download FASTA format files
Proteins        Genes
(1) Hodges LD; Lee LY; McNett H; Gelvin SB; Ream W (2009). The Agrobacterium rhizogenes GALLS gene encodes two secreted proteins required for genetic transformation of plants. J Bacteriol. 191(1):355-64. [PudMed:18952790] experimental
 
experimental This literature contains experimental investigation