SecReT4
T4SS ID174
StrainPseudomonas syringae pv. tomato str. DC3000
Repliconplasmid pDC3000A [Browse all T4SS(s) in this replicon]
AccessionNC_004633
Location43283..71657
NameTra_I
FunctionNA
ClassificationType IVB; Type I
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTraH_ITraI_ITraJ_ITraK_ITraL_ITraM_ITraN_ITraO_ITraP_I
Number111111111
ComponentTraQ_ITraR_ITraS_ITraT_ITraU_ITraV_ITraW_ITraX_ITraY_I
Number110110111
ComponentTrbA_ITrbB_ITrbC_I
Number111

The information of T4SS components from NC_004633
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1PSPTOA003739438..40784 [+], 134729171511major facilitator family transporter 
2PSPTOA003840825..41010 [+], 18629171512hypothetical protein 
3PSPTOA003941032..41367 [-], 33629171513PbsX family transcriptional regulator 
4PSPTOA004041631..42164 [+], 53429171514hypothetical protein 
5PSPTOA004142480..42752 [+], 27329171515putative lipoprotein 
6PSPTOA0042 (pilT)42755..43246 [+], 49229171516pilT protein 
7PSPTOA004343283..43756 [+], 47429171517traH protein, putative  TraH_I
8PSPTOA0044 (traI)43753..44553 [+], 80129171518relaxase  TraI_I
9PSPTOA004544550..45731 [+], 118229171519type IV pilus biogenesis protein  TraJ_I
10PSPTOA004646304..46513 [+], 21029171520hypothetical protein 
11PSPTOA004746510..47061 [+], 55229171521endonuclease 
12PSPTOA0048 (traK-2)47372..47659 [+], 28829171522traK protein  TraK_I
13PSPTOA004947811..51980 [+], 417029171523DNA primase, putative 
14PSPTOA0050 (traL-2)52006..52359 [+], 35429171524traL protein  TraL_I
15PSPTOA0051 (traM-2)52356..53063 [+], 70829171525traM protein  TraM_I
16PSPTOA0052 (traN-2)53120..54178 [+], 105929171526traN protein  TraN_I
17PSPTOA0053 (traO-2)54184..55542 [+], 135929171527traO protein  TraO_I
18PSPTOA0054 (traP-2)55584..56249 [+], 66629171528traP protein  TraP_I
19PSPTOA0055 (traQ-2)56258..56800 [+], 54329171529traQ protein  TraQ_I
20PSPTOA0056 (traR-2)56876..57271 [+], 39629171530traR protein  TraR_I
21PSPTOA005757315..57590 [-], 27629171531hypothetical protein 
22PSPTOA005857568..57768 [-], 20129171532hypothetical protein 
23PSPTOA0059 (traT)57953..58612 [+], 66029171533traT protein  TraT_I
24PSPTOA0060 (traU-2)58596..61643 [+], 304829171534traU protein  TraU_I
25PSPTOA006161667..61903 [+], 23729171535hypothetical protein 
26PSPTOA0062 (traW-2)61946..63160 [+], 121529171536traW protein  TraW_I
27PSPTOA0063 (traX-2)63150..63752 [+], 60329171537traX protein  TraX_I
28PSPTOA0064 (traY-2)63781..65925 [+], 214529171538traY protein  TraY_I
29PSPTOA006566269..66919 [+], 65129171539exclusion-determining protein, putative 
30PSPTOA0066 (trbA)67012..68211 [+], 120029171540trbA protein  TrbA_I
31PSPTOA0067 (trbB)68297..69382 [+], 108629171541trbB protein  TrbB_I
32PSPTOA006869369..71657 [+], 228929171542TraG/TraD family conjugal transfer protein  TrbC_I
33PSPTOA006971685..72107 [+], 42329171543hypothetical protein 
34PSPTOA007072068..72691 [+], 62429171544hypothetical protein 
35PSPTOA007172879..73307 [+], 42929171545GntR family transcriptional regulator 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
(1) Zhao Y; Ma Z; Sundin GW (2005). Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae. J Bacteriol. 187(6):2113-26. [PudMed:15743960] in_silico
 
in_silico This literature contains bioinformatics investigation