SecReT4
T4SS ID176
StrainCandidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Repliconplasmid pHD5AT [Browse all T4SS(s) in this replicon]
AccessionNC_012752
Location17231..44274
NameTra_I
Functionconjugation
ClassificationType IVB; Type I
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentTraH_ITraI_ITraJ_ITraK_ITraL_ITraM_ITraN_ITraO_ITraP_I
Number111111111
ComponentTraQ_ITraR_ITraS_ITraT_ITraU_ITraV_ITraW_ITraX_ITraY_I
Number110110111
ComponentTrbA_ITrbB_ITrbC_I
Number111

The information of T4SS components from NC_012752
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1HDEF_p0012 (mobB)12646..12954 [+], 309238899355MobB relaxase/mobilization protein 
2HDEF_p0013 (mobA)12958..14850 [+], 1893238899356MobA relaxase/mobilization protein 
3HDEF_p0014 (hu)14981..15322 [+], 342238899357DNA-binding protein 
4HDEF_p001515584..16510 [-], 927238899358putative transposase 
5HDEF_p0016 (trbC)17231..21714 [-], 4484238899359TrbC conjugal transfer protein  TrbC_I
6HDEF_p0018 (trbB)21707..22639 [-], 933238899360TrbB conjugal transfer protein  TrbB_I
7HDEF_p0019 (trbA)22715..23824 [-], 1110238899361TrbA conjugal transfer protein  TrbA_I
8HDEF_p002023920..24207 [+], 288238899362hypothetical protein 
9HDEF_p002124283..24558 [+], 276238899363hypothetical protein 
10HDEF_p002224581..25231 [-], 651238899364hypothetical protein 
11HDEF_p0023 (traY)25287..27434 [-], 2148238899365TraY conjugal transfer protein  TraY_I
12HDEF_p0024 (traX)27536..28084 [-], 549238899366TraX conjugal transfer protein  TraX_I
13HDEF_p0025 (traW)28077..29270 [-], 1194238899367TraW conjugal transfer protein  TraW_I
14HDEF_p0027 (traU)29286..32375 [-], 3090238899368TraU conjugal transfer protein  TraU_I
15HDEF_p002632341..32688 [+], 348238899369addiction module, toxin 
16HDEF_p002832703..32990 [+], 288238899370addiction module, antitoxin 
17HDEF_p0029 (traT)33028..33630 [-], 603238899371TraT conjugal transfer protein  TraT_I
18HDEF_p0030 (traR)33660..34055 [-], 396238899372TraR conjugal transfer protein  TraR_I
19HDEF_p0031 (traQ)34103..34642 [-], 540238899373TraQ conjugal transfer protein  TraQ_I
20HDEF_p0032 (traP)34656..35558 [-], 903238899374TraP conjugal transfer protein  TraP_I
21HDEF_p0033 (traO)35434..36606 [-], 1173238899375TraO conjugal transfer protein  TraO_I
22HDEF_p0034 (traN)36610..37614 [-], 1005238899376TraN conjugal transfer protein  TraN_I
23HDEF_p0035 (traM)37611..38282 [-], 672238899377TraM conjugal transfer protein  TraM_I
24HDEF_p0036 (traL)38307..38696 [-], 390238899378TraL conjugal transfer protein  TraL_I
25HDEF_p0037 (traC)38749..41538 [-], 2790238899379DNA primase TraC 
26HDEF_p0038 (traK)41553..41813 [-], 261238899380TraK conjugal transfer protein  TraK_I
27HDEF_p0039 (traJ)41875..43041 [-], 1167238899381TraJ conjugal transfer protein  TraJ_I
28HDEF_p0041 (traI)43028..43834 [-], 807238899382TraI conjugal transfer protein  TraI_I
29HDEF_p0040 (traH)43831..44274 [-], 444238899383TraH conjugal transfer protein  TraH_I
30HDEF_p0042 (pilT)44342..44806 [-], 465238899384PilT lytic transglycosylase, SLT domain protein 
31HDEF_p004344849..45475 [-], 627238899385hypothetical protein 
32HDEF_p0044 (pilM)45472..45903 [-], 432238899386PilM type IV pilus biogenesis protein 
33HDEF_p0045 (pilV)45953..47317 [-], 1365238899387PilV type IV pilus minor pilin subunit, shufflon protein 
34HDEF_p0046 (pilS2)47458..47967 [-], 510238899388PilS2 type IV pilus biosynthesis protein 
35HDEF_p0047 (pilR)47978..49042 [-], 1065238899389PilR type IV pilus biosynthesis protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Degnan PH; Yu Y; Sisneros N; Wing RA; Moran NA (2009). Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proc Natl Acad Sci U S A. 106(22):9063-8. [PudMed:19451630]