SecReT4
T4SS ID177
StrainPseudomonas syringae pv. tomato str. DC3000
Repliconplasmid pDC3000B [Browse all T4SS(s) in this replicon]
AccessionNC_004632
Location38589..66906
NameTra_I
FunctionNA
ClassificationType IVB; Type I
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTraH_ITraI_ITraJ_ITraK_ITraL_ITraM_ITraN_ITraO_ITraP_I
Number111111111
ComponentTraQ_ITraR_ITraS_ITraT_ITraU_ITraV_ITraW_ITraX_ITraY_I
Number110010111
ComponentTrbA_ITrbB_ITrbC_I
Number111

The information of T4SS components from NC_004632
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1PSPTO_B004334735..36081 [+], 134729171583major facilitator family transporter 
2PSPTO_B004436137..36322 [+], 18629171584hypothetical protein 
3PSPTO_B004536339..36692 [-], 35429171585PbsX family transcriptional regulator 
4PSPTO_B004636937..37470 [+], 53429171586hypothetical protein 
5PSPTO_B004737460..37768 [+], 30929171587hypothetical protein 
6PSPTO_B004837786..38058 [+], 27329171588putative lipoprotein 
7PSPTO_B004938100..38552 [+], 45329171589pilT protein, putative 
8PSPTO_B005038589..39062 [+], 47429171590traH protein, putative  TraH_I
9PSPTO_B005139059..39859 [+], 80129171591traI protein  TraI_I
10PSPTO_B005239856..41037 [+], 118229171592type IV pilus biogenesis protein  TraJ_I
11PSPTO_B005341038..41733 [+], 69629171593hypothetical protein 
12PSPTO_B0054 (nuc)41772..42281 [+], 51029171594endonuclease 
13PSPTO_B005542318..42563 [+], 24629171595hypothetical protein 
14PSPTO_B0056 (traK-1)42592..42879 [+], 28829171596traK protein  TraK_I
15PSPTO_B005742922..47595 [+], 467429171597DNA primase TraC 
16PSPTO_B0058 (traL-1)47621..47974 [+], 35429171598traL protein  TraL_I
17PSPTO_B0059 (traM-1)48001..48678 [+], 67829171599traM protein  TraM_I
18PSPTO_B0060 (traN-1)48735..49793 [+], 105929171600traN protein  TraN_I
19PSPTO_B0061 (traO-1)49799..51157 [+], 135929171601traO protein  TraO_I
20PSPTO_B0062 (traP-1)51154..51864 [+], 71129171602traP protein  TraP_I
21PSPTO_B0063 (traQ-1)51873..52415 [+], 54329171603traQ protein  TraQ_I
22PSPTO_B0064 (traR-1)52485..52886 [+], 40229171604traR protein  TraR_I
23PSPTO_B0066 (traU-1)53554..56610 [+], 305729171605traU protein  TraU_I
24PSPTO_B0067 (traW-1)56621..57835 [+], 121529171606traW protein  TraW_I
25PSPTO_B0068 (traX-1)57825..58427 [+], 60329171607traX protein  TraX_I
26PSPTO_B0069 (traY-1)58458..60602 [+], 214529171608traY protein  TraY_I
27PSPTO_B007060678..60950 [+], 27329171609hypothetical protein 
28PSPTO_B007160947..61594 [+], 64829171610surface exclusion protein, putative 
29PSPTO_B007261687..62889 [+], 120329171611hypothetical protein  TrbA_I
30PSPTO_B007362879..63256 [-], 37829171612PilT domain-containing protein 
31PSPTO_B007463253..63453 [-], 20129171613hypothetical protein 
32PSPTO_B007563546..64631 [+], 108629171614trbB protein, putative  TrbB_I
33PSPTO_B0076 (trbC)64618..66906 [+], 228929171615trbC protein  TrbC_I
34PSPTO_B007766984..67412 [+], 42929171616GntR family transcriptional regulator 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

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Proteins        Genes
(1) Zhao Y; Ma Z; Sundin GW (2005). Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae. J Bacteriol. 187(6):2113-26. [PudMed:15743960] in_silico
 
in_silico This literature contains bioinformatics investigation