SecReT4
T4SS ID186
StrainPseudomonas putida plasmid pGRT1 (NC_015855)
Repliconplasmid pGRT1 [Browse all T4SS(s) in this replicon]
AccessionNC_015855
Location6387..14333; 52468..65353; 121398..127061
NameTra_I
FunctionNA
ClassificationType IVB; Type I
insolico This T4SS is identified in this study.

T4SS components
ComponentTraH_ITraI_ITraJ_ITraK_ITraL_ITraM_ITraN_ITraO_ITraP_I
Number111011111
ComponentTraQ_ITraR_ITraS_ITraT_ITraU_ITraV_ITraW_ITraX_ITraY_I
Number110110111
ComponentTrbA_ITrbB_ITrbC_I
Number111

The information of T4SS components from NC_015855
Region 1: 6387..14333
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pGRT1_p0025912..6403 [-], 492340843789hypothetical protein 
2pGRT1_p0036387..6935 [-], 549340843790TraL  TraL_I
3pGRT1_p0046932..9601 [-], 2670340843791TraC-like protein 
4pGRT1_p0059690..10052 [-], 363340843792TraC-like protein 
5pGRT1_p00610264..10794 [+], 531340843793hypothetical protein 
6pGRT1_p00710955..11473 [+], 519340843794hypothetical protein 
7pGRT1_p00811515..11778 [-], 264340843795Trak protein 
8pGRT1_p00911768..12946 [-], 1179340843796plasmid transfer ATPase TraJ  TraJ_I
9pGRT1_p01012943..13821 [-], 879340843797TraI protein  TraI_I
10pGRT1_p01113818..14333 [-], 516340843798TraH protein  TraH_I
11pGRT1_p01214337..16550 [-], 2214340843799relaxase MobA 
12pGRT1_p01316550..16981 [-], 432340843800mobilization protein MobB 
13pGRT1_p01417099..17527 [+], 429340843801mobilization protein MobC 
14pGRT1_p01517539..18243 [+], 705340843802mobilization protein MobD 
15pGRT1_p01618236..18865 [+], 630340843803mobilization protein MobE 
 
Region 2: 52468..65353
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pGRT1_p04747935..48246 [-], 312340843834hypothetical protein 
2pGRT1_p04848515..49627 [-], 1113340843835KfrA protein 
3pGRT1_p04950369..51595 [-], 1227340843836replication protein RepA 
4pGRT1_p05052468..53217 [+], 750340843837transfer protein TraM  TraM_I
5pGRT1_p05153228..54370 [+], 1143340843838TraN protein  TraN_I
6pGRT1_p05254379..55737 [+], 1359340843839TraO protein  TraO_I
7pGRT1_p05355758..56480 [+], 723340843840TraP protein  TraP_I
8pGRT1_p05456491..57024 [+], 534340843841TraQ protein  TraQ_I
9pGRT1_p05557044..57490 [+], 447340843842TraR protein  TraR_I
10pGRT1_p05657536..58255 [+], 720340843843TraT protein  TraT_I
11pGRT1_p05758265..61345 [+], 3081340843844TraU protein  TraU_I
12pGRT1_p05861342..62586 [+], 1245340843845TraW protein  TraW_I
13pGRT1_p05962586..63179 [+], 594340843846TraX protein  TraX_I
14pGRT1_p06063176..65353 [+], 2178340843847TraY protein  TraY_I
15pGRT1_p06165475..65981 [+], 507340843848hypothetical protein 
16pGRT1_p06266010..66774 [+], 765340843849hypothetical protein 
17pGRT1_p06366800..67711 [+], 912340843850hypothetical protein 
18pGRT1_p06467650..68147 [+], 498340843851hypothetical protein 
19pGRT1_p06568394..68651 [-], 258340843852hypothetical protein 
20pGRT1_p06669380..69883 [+], 504340843853ToxN-like protein 
 
Region 3: 121398..127061
Click the image to have a larger view
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1pGRT1_p113118086..118610 [-], 525340843900hypothetical protein 
2pGRT1_p114118984..119757 [+], 774340843901putative ligase 
3pGRT1_p115120015..121388 [-], 1374340843902hypothetical protein 
4pGRT1_p116121398..123638 [-], 2241340843903TrbC protein  TrbC_I
5pGRT1_p117123649..124932 [-], 1284340843904DNA primase 
6pGRT1_p118124942..125931 [-], 990340843905TrbB protein  TrbB_I
7pGRT1_p119125928..127061 [-], 1134340843906TrbA protein  TrbA_I
8pGRT1_p120127070..127486 [-], 417340843907lytic transglycosylase TrbN 
9pGRT1_p121127622..130153 [+], 2532340843908DNA topoisomerase 
10pGRT1_p122130564..130932 [+], 369340843909hypothetical protein 
11pGRT1_p123130941..131324 [+], 384340843910hypothetical protein 
12pGRT1_p124131266..131760 [+], 495340843911hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
Identified as part of this study from NC_015855