SecReT4
T4SS ID189
StrainAgrobacterium sp. H13-3
Repliconplasmid pAspH13-3a [Browse all T4SS(s) in this replicon]
AccessionNC_015184
Location286239..288158; 348857..358462
NameVirB
Functionconjugation
ClassificationType IVA; Type P
sequence This T4SS has been mentioned in a genome sequencing report.

T4SS components
ComponentVirB1VirB2VirB3VirB4VirB5VirB6VirB7VirB8VirB9
Number111111111
ComponentVirB10VirB11VirD4
Number111

The information of T4SS components from NC_015184
Region 1: 286239..288158
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1AGROH133_14644282419..282592 [-], 174325168602hypothetical protein 
2AGROH133_14645282591..282764 [+], 174325168603hypothetical protein 
3AGROH133_14646282817..283110 [-], 294325168604hypothetical protein 
4AGROH133_14649283116..283541 [+], 426325168605transcriptional regulator 
5AGROH133_14650283687..284631 [-], 945325168606NmrA family protein 
6AGROH133_14651284825..284947 [+], 123325168607hypothetical protein 
7AGROH133_14652285097..285375 [-], 279325168608DNA binding protein 
8AGROH133_14653285409..285720 [-], 312325168609hypothetical protein 
9AGROH133_14654285763..285951 [-], 189325168610hypothetical protein 
10AGROH133_14656286147..286242 [-], 96325168611hypothetical protein 
11AGROH133_14658286239..288158 [-], 1920325168612conjugal transfer coupling protein TraG  VirD4
12AGROH133_14663288155..288388 [-], 234325168613conjugal transfer protein D 
13AGROH133_14664288378..288665 [-], 288325168614conjugal transfer protein C 
 
Region 2: 348857..358462
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1AGROH133_14773343980..344414 [+], 435325168670MarR family transcriptional regulator 
2AGROH133_14774344469..345215 [+], 747325168671short chain dehydrogenase 
3AGROH133_14775345223..345339 [-], 117325168672hypothetical protein 
4AGROH133_14776345444..345734 [+], 291325168673hypothetical protein 
5AGROH133_14777345849..346238 [-], 390325168674hypothetical protein 
6AGROH133_14779346418..346729 [-], 312325168675hypothetical protein 
7AGROH133_14781346912..347004 [-], 93325168676hypothetical protein 
8AGROH133_14782347098..347502 [-], 405325168677hypothetical protein 
9AGROH133_14783347860..348222 [-], 363325168678transcriptional regulator protein 
10AGROH133_14784348316..348855 [+], 540325168679hypothetical protein 
11AGROH133_14786348857..349546 [+], 690325168680type IV secretion protein AvhB1  VirB1
12AGROH133_14787349543..349842 [+], 300325168681type IV secretion protein AvhB2  VirB2
13AGROH133_14792349845..350186 [+], 342325168682type IV secretion protein AvhB3  VirB3
14AGROH133_14794350179..352560 [+], 2382325168683type IV secretion protein AvhB4  VirB4
15AGROH133_14795352560..353258 [+], 699325168684type IV secretion protein AvhB5  VirB5
16AGROH133_14797353330..353488 [+], 159325168685hypothetical protein 
17AGROH133_14798353493..354428 [+], 936325168686type IV secretion protein AvhB6  VirB6
18AGROH133_14804354464..354730 [+], 267325168687type IV secretion protein AvhB7  VirB7
19AGROH133_14805354734..355405 [+], 672325168688type IV secretion protein AvhB8  VirB8
20AGROH133_14807355402..356256 [+], 855325168689type IV secretion protein AvhB9  VirB9
21AGROH133_14809356271..357443 [+], 1173325168690type IV secretion protein AvhB10  VirB10
22AGROH133_14811357452..358462 [+], 1011325168691type IV secretion protein AvhB11  VirB11
23AGROH133_14812358805..359080 [-], 276325168692ArsR family transcriptional regulator 
24AGROH133_14814359611..360570 [+], 960325168693AraC family transcriptional regulator 
25AGROH133_14815360984..361397 [-], 414325168694nucleoside diphosphate kinase regulator 
26AGROH133_14816361600..361791 [-], 192325168695hypothetical protein 
27AGROH133_14817361812..362351 [+], 540325168696nucleoside diphosphate kinase regulator 
28AGROH133_14818362524..363426 [+], 903325168697hypothetical protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
(1) Wibberg D; Blom J; Jaenicke S; Kollin F; Rupp O; Scharf B; Schneiker-Bekel S; Sczcepanowski R; Goesmann A; Setubal JC; Schmitt R; Puhler A; Schluter A (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J Biotechnol. 155(1):50-62. [PudMed:21329740]