SecReT4
T4SS ID239
StrainAcidovorax sp. JS42
Repliconchromosome [Browse all T4SS(s) in this replicon]
AccessionNC_008782
Location2701523..2704188; 3076590..3103658
NameTrb
Functionconjugation
ClassificationType IVA; Type P
insolico Bioinformatics investigation has been performed on this T4SS.

T4SS components
ComponentTrbBTrbCTrbDTrbETrbFTrbGTrbHTrbITrbJ
Number111111012
ComponentTrbKTrbLTrbNTraFTraG
Number12001

The information of T4SS components from NC_008782
Region 1: 2701523..2704188
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Ajs_25302696611..2699397 [-], 2787121594870putative DNA methylase 
2Ajs_25312699456..2699656 [-], 201121594871phage transcriptional regulator AlpA 
3Ajs_25342700955..2701185 [-], 231121594872hypothetical protein 
4Ajs_25352701248..2701526 [-], 279121594873hypothetical protein 
5Ajs_25362701523..2703121 [-], 1599121594874TrbL/VirB6 plasmid conjugal transfer protein  TrbL
6Ajs_25372703118..2703387 [-], 270121594875putative entry/exclusion protein TrbK  TrbK
7Ajs_25382703403..2704188 [-], 786121594876conjugal transfer protein TrbJ  TrbJ
8Ajs_25392704430..2704801 [-], 372121594877conjugal transfer relaxosome component TraJ 
9Ajs_25402705121..2705399 [-], 279121594878putative OriT-binding protein, TraK 
10Ajs_25412706113..2706982 [-], 870121594879plasmid and phage iteron-binding protein 
11Ajs_25422706972..2707850 [-], 879121594880replication protein A 
12Ajs_25432707854..2708108 [-], 255121594881hypothetical protein 
13Ajs_25442708170..2709159 [+], 990121594882hypothetical protein 
 
Region 2: 3076590..3103658
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#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductComponent
1Ajs_28973072923..3073810 [+], 888121595218UDP-glucose pyrophosphorylase 
2Ajs_28983073922..3074149 [-], 228121595219SirA family protein 
3Ajs_28993074155..3074718 [-], 564121595220NUDIX hydrolase 
4Ajs_2900 (cysM)3074834..3075739 [-], 906121595221cysteine synthase B 
5Ajs_29013076351..3076593 [-], 243121595222hypothetical protein 
6Ajs_29023076590..3077852 [-], 1263121595223conjugation TrbI family protein  TrbI
7Ajs_29033077854..3078834 [-], 981121595224conjugal transfer protein TrbG/VirB9/CagX  TrbG
8Ajs_29043078831..3079535 [-], 705121595225conjugal transfer protein TrbF  TrbF
9Ajs_29053079554..3080888 [-], 1335121595226conjugal transfer protein TrbL  TrbL
10Ajs_29063080885..3081208 [-], 324121595227putative lipoprotein 
11Ajs_29073081220..3081948 [-], 729121595228conjugal transfer protein TrbJ  TrbJ
12Ajs_29083081945..3084380 [-], 2436121595229conjugal transfer ATPase TrbE  TrbE
13Ajs_29093084390..3084662 [-], 273121595230putative conjugal transfer TrbD transmembrane protein  TrbD
14Ajs_29103084659..3085036 [-], 378121595231conjugal transfer protein TrbC  TrbC
15Ajs_29113085033..3086067 [-], 1035121595232type II secretion system protein E  TrbB
16Ajs_29123086064..3086510 [-], 447121595233CopG/DNA-binding domain-containing protein 
17Ajs_29133086507..3088504 [-], 1998121595234conjugal transfer coupling protein TraG  TraG
18Ajs_29153088740..3089018 [-], 279121595235putative lipoprotein 
19Ajs_29163089151..3090665 [-], 1515121595236transposase IS66 
20Ajs_29173090746..3091057 [-], 312121595237IS66 Orf2 family protein 
21Ajs_29183091078..3091530 [-], 453121595238transposase IS3/IS911 family protein 
22Ajs_29193091527..3092432 [-], 906121595239LysR family transcriptional regulator 
23Ajs_29203092469..3092786 [-], 318121595240hypothetical protein 
24Ajs_29213092812..3093846 [-], 1035121595241secretion protein HlyD family protein 
25Ajs_29233094607..3095569 [-], 963121595242transposase IS116/IS110/IS902 family protein 
26Ajs_29243096608..3098143 [-], 1536121595243RND efflux system outer membrane lipoprotein 
27Ajs_29253098244..3099023 [+], 780121595244TetR family transcriptional regulator 
28Ajs_29263099023..3099514 [+], 492121595245MarR family transcriptional regulator 
29Ajs_29273099511..3100470 [+], 960121595246transposase, IS4 family protein 
30Ajs_29293103047..3103658 [-], 612121595247TraF peptidase 
31Ajs_29303103655..3104200 [-], 546121595248hypothetical protein 
32Ajs_29313104197..3104472 [-], 276121595249hypothetical protein 
33Ajs_29323104469..3105107 [-], 639121595250cobyrinic acid a,c-diamide synthase 
34Ajs_29333105361..3106218 [-], 858121595251putative replication initiator and transcription repressor protein 
35Ajs_29343106245..3106565 [-], 321121595252hypothetical protein 
36Ajs_29353106634..3107383 [-], 750121595253hypothetical protein 
37Ajs_29363107725..3108072 [-], 348121595254putative lipoprotein 
38Ajs_29373108295..3108588 [+], 294121595255helix-turn-helix domain-containing protein 
 
flank Genes in the 5-Kb flanking regions if available, or non-essential genes in the T4SS gene cluster if any.

Download FASTA format files
Proteins        Genes
This T4SS is encoded by the integrative and conjugative element (ICE) ICE(Tn4371)6039 and is thought to contribute to the transfer of this element. (click on the ICE name to view the detail ICE informaion in ICEberg, an ICE database)
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] in_silico
 
in_silico This literature contains bioinformatics investigation